DoriC

RefSeq

NC_010634.1

Accession number

NC_010634.1

DoriC accession number

ORI92520061

OriC length

380 nt

OriC AT content

0.594737

The location of oriC region

4661327..4661706 nt

Browse in NCBI

OriC map

OriC sequences

mioCTTAGCTCAAAGATCGCGCGAACGAATGTGTATAACTATGCTTAAAAGCAGGGTAAAACCAGTAGATATCCACATAACAACCTTGATTCTGCCGAGTGCCTGTGCATAACATGCCATTTAGATCCCAGCTTATACGCAATAGGATCACCGGTCACTCACAACAAACGATCCTCCTTAATTATATGATCTTCCATATGAATAATCACTTATCCACAGAGGATCATGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAGATCTTCTTTTAATTAAAGGCGATCCTATGCCACTTGGTCGATCGTCTAAACTTGAGTAGAATCCCCCACCCCAGGGCAAACACAGAAATTCGCATAACGGCGAGGTGCAGTACCgidA

miocTTAGCTCAAAGATCGCGCGAACGAATGTGTATAACTATGCTTAAAAGCAGGGTAAAACCAGTAGATATCCACATAACAACCTTGATTCTGCCGAGTGCCTGTGCATAACATGCCATTTAGATCCCAGCTTATACGCAATAGGATCACCGGTCACTCACAACAAACGATCCTCCTTAATTATATGATCTTCCATATGAATAATCACTTATCCACAGAGGATCATGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAGATCTTCTTTTAATTAAAGGCGATCCTATGCCACTTGGTCGATCGTCTAAACTTGAGTAGAATCCCCCACCCCAGGGCAAACACAGAAATTCGCATAACGGCGAGGTGCAGTACCgida

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif GATCYT

Start	P-value		Site
287	2.06e-04	AATTAAAGGC	GATCCT	ATGCCACTTG
224	2.06e-04	AGAGGATCAT	GATCCT	AATAAGAGAT
166	2.06e-04	CACAACAAAC	GATCCT	CCTTAATTAT
266	4.28e-04	TAAATAAAAA	GATCTT	CTTTTAATTA
250	4.28e-04	CTAATAAAGA	GATCTT	TAAATAAAAA

Motif GSCGAGKKSCWGTRC

Start	P-value		Site
90	2.08e-09	CCTTGATTCT	GCCGAGTGCCTGTGC	ATAACATGCC
365	4.61e-09	TTCGCATAAC	GGCGAGGTGCAGTAC	C

Motif SCAGGG

Start	P-value		Site
47	6.98e-05	ATGCTTAAAA	GCAGGG	TAAAACCAGT
337	1.65e-04	ATCCCCCACC	CCAGGG	CAAACACAGA

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI92520061	100.0	380	0	0	1	380	1	380	0.0	702
ORI10020019	99.737	380	1	0	1	380	380	1	0.0	697
ORI96000376	99.474	380	2	0	1	380	1	380	0.0	691
ORI96000375	99.474	380	2	0	1	380	380	1	0.0	691
ORI96000374	99.474	380	2	0	1	380	380	1	0.0	691
ORI93020117	99.474	380	2	0	1	380	380	1	0.0	691
ORI90020045	99.474	380	2	0	1	380	1	380	0.0	691
ORI20020031	99.474	380	2	0	1	380	380	1	0.0	691
ORI20020030	99.474	380	2	0	1	380	380	1	0.0	691
ORI92020050	99.211	380	3	0	1	380	380	1	0.0	686
ORI92320057	98.947	380	4	0	1	380	1	380	0.0	680
ORI92220056	98.684	380	5	0	1	380	380	1	0.0	675
ORI10020008	98.688	381	4	1	1	380	381	1	0.0	675
ORI96020516	99.357	311	2	0	1	311	311	1	0.0	564
ORI10020018	99.331	299	2	0	1	299	299	1	0.0	542
ORI10030027	99.331	299	2	0	1	299	299	1	0.0	542
ORI80020043	91.534	378	30	2	4	380	377	1	0.0	520
ORI94030361	90.741	378	33	2	4	380	377	1	0.0	503
ORI92220054	86.508	378	40	8	6	377	6	378	0.0	405
ORI96020517	88.141	312	35	2	1	311	1	311	0.0	370
ORI10030033	80.851	329	52	11	23	346	372	50	0.0	248
ORI93020097	84.914	232	30	5	99	328	280	52	0.0	230
ORI94030310	80.645	310	46	13	26	328	350	48	0.0	228
ORI93020095	79.331	329	57	11	23	346	20	342	0.0	220
ORI96000435	79.027	329	57	12	23	346	371	50	0.0	215
ORI96000370	78.022	364	60	20	25	377	22	376	0.0	211
ORI94030349	78.022	364	60	20	25	377	22	376	0.0	211
ORI93020116	77.551	343	54	21	50	380	332	1	0.0	185
ORI93020115	77.551	343	54	21	50	380	332	1	0.0	185
ORI93030282	78.065	310	57	10	26	330	349	46	0.0	185
ORI96000391	77.259	343	56	20	50	380	333	1	0.0	182
ORI93020094	76.453	327	63	11	26	345	23	342	7.33019e-42	165
ORI94030317	75.841	327	66	13	26	345	357	37	1.59e-38	154
ORI93020110	75.61	328	65	14	26	345	23	343	7.38e-37	148
ORI93020092	75.172	290	56	14	100	380	96	378	4.47e-29	122
ORI96000387	74.26	338	61	21	26	346	24	352	5.79e-28	119
ORI93020109	74.26	338	61	21	26	346	24	352	5.79e-28	119
ORI96000423	74.903	259	51	12	120	371	111	362	4.51e-24	106
ORI93020091	74.905	263	46	16	98	346	96	352	5.83e-23	102