DoriC

RefSeq

NC_017309.1

Accession number

NC_017309.1

DoriC accession number

ORI96000387

OriC length

396 nt

OriC AT content

0.580808

The location of oriC region

3652343..3652738 nt

Browse in NCBI

OriC map

OriC sequences

mioCGTACGTTTTTTGCCCACTTAGTCTGTGTATAAGTCTTGTTATAAGCAGTAAAAAACCGGTAGTTATCCAAATAACAAGCCATGGTCATTTTTGCGCCTGTGCATAACAACCAATAAAGATCCCAGCTTTTACGGTCTGGGATCACCGATCTTCCACAGTAAATGATCCTGCGTAGTAACTTGATCCTTATTGAGAAATTCGTGTTATCCACAAAGGATCGCGATCCTAATAGAAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTTTAAATACTGGGCGGAGGATCCACGATCCACGTAGGTTGGACCTGCGCCTAAACTTGAGTAGAATCCCCACCCCTAGGCAAATAACGATCGTTGAGAGCCTTTCGGTTAGCGCGAGGTGTAGTACCgidA

miocGTACGTTTTTTGCCCACTTAGTCTGTGTATAAGTCTTGTTATAAGCAGTAAAAAACCGGTAGTTATCCAAATAACAAGCCATGGTCATTTTTGCGCCTGTGCATAACAACCAATAAAGATCCCAGCTTTTACGGTCTGGGATCACCGATCTTCCACAGTAAATGATCCTGCGTAGTAACTTGATCCTTATTGAGAAATTCGTGTTATCCACAAAGGATCGCGATCCTAATAGAAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTTTAAATACTGGGCGGAGGATCCACGATCCACGTAGGTTGGACCTGCGCCTAAACTTGAGTAGAATCCCCACCCCTAGGCAAATAACGATCGTTGAGAGCCTTTCGGTTAGCGCGAGGTGTAGTACCgida

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif TGVDCCTGYGYATAA

Start	P-value		Site
92	6.91e-09	TGGTCATTTT	TGCGCCTGTGCATAA	CAACCAATAA
308	9.81e-08	CCACGTAGGT	TGGACCTGCGCCTAA	ACTTGAGTAG
163	2.63e-07	CCACAGTAAA	TGATCCTGCGTAGTA	ACTTGATCCT
18	3.11e-07	TTTTGCCCAC	TTAGTCTGTGTATAA	GTCTTGTTAT

Motif GATCYT

Start	P-value		Site
265	2.86e-04	AAATAAAAAA	GATCTT	TTAAATACTG
248	2.86e-04	CTAATAAAGA	GATCTT	TAAATAAAAA
147	2.86e-04	TGGGATCACC	GATCTT	CCACAGTAAA
222	5.07e-04	AAAGGATCGC	GATCCT	AATAGAAGAT
182	5.07e-04	GTAGTAACTT	GATCCT	TATTGAGAAA

Motif AVGATC

Start	P-value		Site
355	4.69e-04	TAGGCAAATA	ACGATC	GTTGAGAGCC
293	4.69e-04	CGGAGGATCC	ACGATC	CACGTAGGTT
286	4.69e-04	TACTGGGCGG	AGGATC	CACGATCCAC
214	4.69e-04	TTATCCACAA	AGGATC	GCGATCCTAA
116	8.07e-04	ACAACCAATA	AAGATC	CCAGCTTTTA

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI96000387	100.0	396	0	0	1	396	1	396	0.0	732
ORI93020109	100.0	396	0	0	1	396	1	396	0.0	732
ORI93020091	94.71	397	19	2	1	396	1	396	0.0	616
ORI92220054	77.65	349	52	22	24	363	26	357	0.0	189
ORI96000391	79.646	226	32	12	52	270	328	110	2.14e-37	150
ORI93020116	79.736	227	30	12	52	270	327	109	2.14e-37	150
ORI93020115	79.736	227	30	12	52	270	327	109	2.14e-37	150
ORI92520062	79.556	225	34	9	52	270	327	109	2.14e-37	150
ORI94030310	83.439	157	19	7	117	270	257	105	4.64e-34	139
ORI93020095	75.851	323	48	26	51	363	51	353	1.67e-33	137
ORI96000435	75.776	322	49	25	51	363	340	39	6e-33	135
ORI10030033	75.701	321	51	23	52	363	341	39	6e-33	135
ORI94030317	75.466	322	52	22	52	363	329	25	7.77e-32	132
ORI80020043	78.571	210	38	7	64	270	315	110	7.77e-32	132
ORI93020094	77.974	227	35	12	52	271	51	269	1e-30	128
ORI94030361	77.99	209	41	5	64	270	315	110	3.61e-30	126
ORI93020092	77.434	226	39	9	52	271	50	269	1.3e-29	124
ORI96020517	77.512	209	42	5	64	270	66	271	1.68e-28	121
ORI93020110	74.843	318	55	21	52	360	51	352	1.68e-28	121
ORI92520061	74.26	338	61	21	24	352	26	346	6.05e-28	119
ORI10020019	74.184	337	63	19	24	352	355	35	6.05e-28	119
ORI96000376	73.887	337	64	19	24	352	26	346	2.81e-26	113
ORI96000375	73.887	337	64	19	24	352	355	35	2.81e-26	113
ORI96000374	73.887	337	64	19	24	352	355	35	2.81e-26	113
ORI93020117	73.887	337	64	19	24	352	355	35	2.81e-26	113
ORI92020050	73.887	337	64	19	24	352	355	35	2.81e-26	113
ORI90020045	73.887	337	64	19	24	352	26	346	2.81e-26	113
ORI20020031	73.887	337	64	19	24	352	355	35	2.81e-26	113
ORI20020030	73.887	337	64	19	24	352	355	35	2.81e-26	113
ORI96020516	75.299	251	53	8	24	270	286	41	1.01e-25	111
ORI10020018	75.299	251	53	8	24	270	274	29	1.01e-25	111
ORI10030027	75.299	251	53	8	24	270	274	29	1.01e-25	111
ORI92220056	73.433	335	69	16	24	352	355	35	1.31e-24	108
ORI93020097	77.901	181	32	6	94	270	284	108	4.71e-24	106