RefSeq NC_013508.1
Accession number NC_013508.1
DoriC accession number ORI93020109
OriC length 396 nt
OriC AT content 0.580808
The location of oriC region 3728199..3728594 nt
Browse in NCBI
OriC map
OriC sequences
mioCGTACGTTTTTTGCCCACTTAGTCTGTGTATAAGTCTTGTTATAAGCAGTAAAAAACCGGTAGTTATCCAAATAACAAGCCATGGTCATTTTTGCGCCTGTGCATAACAACCAATAAAGATCCCAGCTTTTACGGTCTGGGATCACCGATCTTCCACAGTAAATGATCCTGCGTAGTAACTTGATCCTTATTGAGAAATTCGTGTTATCCACAAAGGATCGCGATCCTAATAGAAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTTTAAATACTGGGCGGAGGATCCACGATCCACGTAGGTTGGACCTGCGCCTAAACTTGAGTAGAATCCCCACCCCTAGGCAAATAACGATCGTTGAGAGCCTTTCGGTTAGCGCGAGGTGTAGTACCgidA
mioCGTACGTTTTTTGCCCACTTAGTCTGTGTATAAGTCTTGTTATAAGCAGTAAAAAACCGGTAGTTATCCAAATAACAAGCCATGGTCATTTTTGCGCCTGTGCATAACAACCAATAAAGATCCCAGCTTTTACGGTCTGGGATCACCGATCTTCCACAGTAAATGATCCTGCGTAGTAACTTGATCCTTATTGAGAAATTCGTGTTATCCACAAAGGATCGCGATCCTAATAGAAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTTTAAATACTGGGCGGAGGATCCACGATCCACGTAGGTTGGACCTGCGCCTAAACTTGAGTAGAATCCCCACCCCTAGGCAAATAACGATCGTTGAGAGCCTTTCGGTTAGCGCGAGGTGTAGTACCgidA
mioCGTACGTTTTTTGCCCACTTAGTCTGTGTATAAGTCTTGTTATAAGCAGTAAAAAACCGGTAGTTATCCAAATAACAAGCCATGGTCATTTTTGCGCCTGTGCATAACAACCAATAAAGATCCCAGCTTTTACGGTCTGGGATCACCGATCTTCCACAGTAAATGATCCTGCGTAGTAACTTGATCCTTATTGAGAAATTCGTGTTATCCACAAAGGATCGCGATCCTAATAGAAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTTTAAATACTGGGCGGAGGATCCACGATCCACGTAGGTTGGACCTGCGCCTAAACTTGAGTAGAATCCCCACCCCTAGGCAAATAACGATCGTTGAGAGCCTTTCGGTTAGCGCGAGGTGTAGTACCgidA
mioCGTACGTTTTTTGCCCACTTAGTCTGTGTATAAGTCTTGTTATAAGCAGTAAAAAACCGGTAGTTATCCAAATAACAAGCCATGGTCATTTTTGCGCCTGTGCATAACAACCAATAAAGATCCCAGCTTTTACGGTCTGGGATCACCGATCTTCCACAGTAAATGATCCTGCGTAGTAACTTGATCCTTATTGAGAAATTCGTGTTATCCACAAAGGATCGCGATCCTAATAGAAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTTTAAATACTGGGCGGAGGATCCACGATCCACGTAGGTTGGACCTGCGCCTAAACTTGAGTAGAATCCCCACCCCTAGGCAAATAACGATCGTTGAGAGCCTTTCGGTTAGCGCGAGGTGTAGTACCgidA
mioCGTACGTTTTTTGCCCACTTAGTCTGTGTATAAGTCTTGTTATAAGCAGTAAAAAACCGGTAGTTATCCAAATAACAAGCCATGGTCATTTTTGCGCCTGTGCATAACAACCAATAAAGATCCCAGCTTTTACGGTCTGGGATCACCGATCTTCCACAGTAAATGATCCTGCGTAGTAACTTGATCCTTATTGAGAAATTCGTGTTATCCACAAAGGATCGCGATCCTAATAGAAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTTTAAATACTGGGCGGAGGATCCACGATCCACGTAGGTTGGACCTGCGCCTAAACTTGAGTAGAATCCCCACCCCTAGGCAAATAACGATCGTTGAGAGCCTTTCGGTTAGCGCGAGGTGTAGTACCgidA
mioCGTACGTTTTTTGCCCACTTAGTCTGTGTATAAGTCTTGTTATAAGCAGTAAAAAACCGGTAGTTATCCAAATAACAAGCCATGGTCATTTTTGCGCCTGTGCATAACAACCAATAAAGATCCCAGCTTTTACGGTCTGGGATCACCGATCTTCCACAGTAAATGATCCTGCGTAGTAACTTGATCCTTATTGAGAAATTCGTGTTATCCACAAAGGATCGCGATCCTAATAGAAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTTTAAATACTGGGCGGAGGATCCACGATCCACGTAGGTTGGACCTGCGCCTAAACTTGAGTAGAATCCCCACCCCTAGGCAAATAACGATCGTTGAGAGCCTTTCGGTTAGCGCGAGGTGTAGTACCgidA
mioCGTACGTTTTTTGCCCACTTAGTCTGTGTATAAGTCTTGTTATAAGCAGTAAAAAACCGGTAGTTATCCAAATAACAAGCCATGGTCATTTTTGCGCCTGTGCATAACAACCAATAAAGATCCCAGCTTTTACGGTCTGGGATCACCGATCTTCCACAGTAAATGATCCTGCGTAGTAACTTGATCCTTATTGAGAAATTCGTGTTATCCACAAAGGATCGCGATCCTAATAGAAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTTTAAATACTGGGCGGAGGATCCACGATCCACGTAGGTTGGACCTGCGCCTAAACTTGAGTAGAATCCCCACCCCTAGGCAAATAACGATCGTTGAGAGCCTTTCGGTTAGCGCGAGGTGTAGTACCgidA
miocGTACGTTTTTTGCCCACTTAGTCTGTGTATAAGTCTTGTTATAAGCAGTAAAAAACCGGTAGTTATCCAAATAACAAGCCATGGTCATTTTTGCGCCTGTGCATAACAACCAATAAAGATCCCAGCTTTTACGGTCTGGGATCACCGATCTTCCACAGTAAATGATCCTGCGTAGTAACTTGATCCTTATTGAGAAATTCGTGTTATCCACAAAGGATCGCGATCCTAATAGAAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTTTAAATACTGGGCGGAGGATCCACGATCCACGTAGGTTGGACCTGCGCCTAAACTTGAGTAGAATCCCCACCCCTAGGCAAATAACGATCGTTGAGAGCCTTTCGGTTAGCGCGAGGTGTAGTACCgida
mioCGTACGTTTTTTGCCCACTTAGTCTGTGTATAAGTCTTGTTATAAGCAGTAAAAAACCGGTAGTTATCCAAATAACAAGCCATGGTCATTTTTGCGCCTGTGCATAACAACCAATAAAGATCCCAGCTTTTACGGTCTGGGATCACCGATCTTCCACAGTAAATGATCCTGCGTAGTAACTTGATCCTTATTGAGAAATTCGTGTTATCCACAAAGGATCGCGATCCTAATAGAAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTTTAAATACTGGGCGGAGGATCCACGATCCACGTAGGTTGGACCTGCGCCTAAACTTGAGTAGAATCCCCACCCCTAGGCAAATAACGATCGTTGAGAGCCTTTCGGTTAGCGCGAGGTGTAGTACCgidA
mioCGTACGTTTTTTGCCCACTTAGTCTGTGTATAAGTCTTGTTATAAGCAGTAAAAAACCGGTAGTTATCCAAATAACAAGCCATGGTCATTTTTGCGCCTGTGCATAACAACCAATAAAGATCCCAGCTTTTACGGTCTGGGATCACCGATCTTCCACAGTAAATGATCCTGCGTAGTAACTTGATCCTTATTGAGAAATTCGTGTTATCCACAAAGGATCGCGATCCTAATAGAAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTTTAAATACTGGGCGGAGGATCCACGATCCACGTAGGTTGGACCTGCGCCTAAACTTGAGTAGAATCCCCACCCCTAGGCAAATAACGATCGTTGAGAGCCTTTCGGTTAGCGCGAGGTGTAGTACCgidA
mioCGTACGTTTTTTGCCCACTTAGTCTGTGTATAAGTCTTGTTATAAGCAGTAAAAAACCGGTAGTTATCCAAATAACAAGCCATGGTCATTTTTGCGCCTGTGCATAACAACCAATAAAGATCCCAGCTTTTACGGTCTGGGATCACCGATCTTCCACAGTAAATGATCCTGCGTAGTAACTTGATCCTTATTGAGAAATTCGTGTTATCCACAAAGGATCGCGATCCTAATAGAAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTTTAAATACTGGGCGGAGGATCCACGATCCACGTAGGTTGGACCTGCGCCTAAACTTGAGTAGAATCCCCACCCCTAGGCAAATAACGATCGTTGAGAGCCTTTCGGTTAGCGCGAGGTGTAGTACCgidA

5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif TGVDCCTGYGYATAA

StartP-valueSite
926.91e-09TGGTCATTTTTGCGCCTGTGCATAACAACCAATAA
3089.81e-08CCACGTAGGTTGGACCTGCGCCTAAACTTGAGTAG
1632.63e-07CCACAGTAAATGATCCTGCGTAGTAACTTGATCCT
183.11e-07TTTTGCCCACTTAGTCTGTGTATAAGTCTTGTTAT

Motif GATCYT

StartP-valueSite
2652.86e-04AAATAAAAAAGATCTTTTAAATACTG
2482.86e-04CTAATAAAGAGATCTTTAAATAAAAA
1472.86e-04TGGGATCACCGATCTTCCACAGTAAA
2225.07e-04AAAGGATCGCGATCCTAATAGAAGAT
1825.07e-04GTAGTAACTTGATCCTTATTGAGAAA

Motif AVGATC

StartP-valueSite
3554.69e-04TAGGCAAATAACGATCGTTGAGAGCC
2934.69e-04CGGAGGATCCACGATCCACGTAGGTT
2864.69e-04TACTGGGCGGAGGATCCACGATCCAC
2144.69e-04TTATCCACAAAGGATCGCGATCCTAA
1168.07e-04ACAACCAATAAAGATCCCAGCTTTTA

Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI96000387 100.0 396 0 0 1 396 1 396 0.0 732
ORI93020109 100.0 396 0 0 1 396 1 396 0.0 732
ORI93020091 94.71 397 19 2 1 396 1 396 0.0 616
ORI92220054 77.65 349 52 22 24 363 26 357 0.0 189
ORI96000391 79.646 226 32 12 52 270 328 110 2.14e-37 150
ORI93020116 79.736 227 30 12 52 270 327 109 2.14e-37 150
ORI93020115 79.736 227 30 12 52 270 327 109 2.14e-37 150
ORI92520062 79.556 225 34 9 52 270 327 109 2.14e-37 150
ORI94030310 83.439 157 19 7 117 270 257 105 4.64e-34 139
ORI93020095 75.851 323 48 26 51 363 51 353 1.67e-33 137
ORI96000435 75.776 322 49 25 51 363 340 39 6e-33 135
ORI10030033 75.701 321 51 23 52 363 341 39 6e-33 135
ORI94030317 75.466 322 52 22 52 363 329 25 7.77e-32 132
ORI80020043 78.571 210 38 7 64 270 315 110 7.77e-32 132
ORI93020094 77.974 227 35 12 52 271 51 269 1e-30 128
ORI94030361 77.99 209 41 5 64 270 315 110 3.61e-30 126
ORI93020092 77.434 226 39 9 52 271 50 269 1.3e-29 124
ORI96020517 77.512 209 42 5 64 270 66 271 1.68e-28 121
ORI93020110 74.843 318 55 21 52 360 51 352 1.68e-28 121
ORI92520061 74.26 338 61 21 24 352 26 346 6.05e-28 119
ORI10020019 74.184 337 63 19 24 352 355 35 6.05e-28 119
ORI96000376 73.887 337 64 19 24 352 26 346 2.81e-26 113
ORI96000375 73.887 337 64 19 24 352 355 35 2.81e-26 113
ORI96000374 73.887 337 64 19 24 352 355 35 2.81e-26 113
ORI93020117 73.887 337 64 19 24 352 355 35 2.81e-26 113
ORI92020050 73.887 337 64 19 24 352 355 35 2.81e-26 113
ORI90020045 73.887 337 64 19 24 352 26 346 2.81e-26 113
ORI20020031 73.887 337 64 19 24 352 355 35 2.81e-26 113
ORI20020030 73.887 337 64 19 24 352 355 35 2.81e-26 113
ORI96020516 75.299 251 53 8 24 270 286 41 1.01e-25 111
ORI10020018 75.299 251 53 8 24 270 274 29 1.01e-25 111
ORI10030027 75.299 251 53 8 24 270 274 29 1.01e-25 111
ORI92220056 73.433 335 69 16 24 352 355 35 1.31e-24 108
ORI93020097 77.901 181 32 6 94 270 284 108 4.71e-24 106