DoriC

RefSeq

NC_010257

DoriC accession number

pORI00000421

OriC length

1485 nt

OriC AT content

0.6101

The location of oriC region

30380..31864 nt

Browse in NCBI

OriC map

OriC sequences

AAGTCCTCCGCTTGTCTCATTGGCATAATAGCATCTTTAAAAGCACTCTTAAAAGTGCTTTTGTTGAGGAAAACATCAGAACAGGTGAGATATGGCTCTTTCCGACATCGCCTTAAAACGCTCTGTAACGCGTTCTGAGCGTTTTTTCCCGTTTCGTTATAGTCAGCTACGGTTTAACGGTTTTTAACGCCGCTCAACGCTTTTTAGCGGCCTTGTTGCTGTGATCTGTTGCCATGATCCGGATAGGAGTTCAATCTTGATCAAAATTTCCTCAAGGCAACGACTGTTTTGTAAATACCCTCTAAAATGCGCTGTATCGCATTCTGAGCGATTTTTTCGATTTCGCATGGTTTTCCTCATGGTTACATCGAACAAAGCGTTAGAAAGCGATTCAGGGCTTCTCAGTGAAAGATCCAAAAAGGATCAATCAACGGATCGTATGATCTGAACTCTTCTGGTTTTGAGAAAGGAGACACCGCTCGCCGCAGTCAAACGACCGAGCGTAGCGAGTTAGTGAGCGAGGAAGCGGAACAGCACAGGGATAACATCAGGCAATTACGCGCAGTGGTTAAAAAGCGAGCATATTGTTTTTATGTGTGGTTGTCCTGGTTCAGAGTGATCTGTCCTCTGGGTTTACGCAAAGTTATCCACAGGTAGTGTGAATTTTTTGTTCTGAGCAAAGTTATCCACAGATTTTTTGTGTTTTTTTGCTTATTAAACTTATTGTTTTTAAGATCTTAAATGTAGATCGGTAGATCTACTTTAAGATCTTTAAACTTATATAACTTATTTGCAAGCATCATGCCAGTTTTTTTATCAATGATTTCATGATGATAAATGATGTTTTTGGTTTTTGAAAAATAAAAAGTGAACGCCTTTGCCGGAAATAGTGAACGCCTTTGCCGGAAAAAAAATGCGAAAAGTGAACGCCTTTGCCGGAAGTGGTGAACGCCTTTGCCGGAAAAAAAACAAAAAGTGAACGCCTTTGCCGTTTCTTTGCTTCTTTATCTATGCAGAGCTTTAGGAATGTTTTTCGTAATCTCTTTAGATCTTGATGTCTTGTTATGATTGCTATAGCCATACCTTTTTGTTTGCAAGAAGGGGAGCTTATTGAGAACCTCACCAAAGGTGAACATCTGTGCCGTTGAAAGGTGAATGCATATGCCGTGTGATTATTACATGTAGAGTTTAAGGTATTTAATCTTTTAACTATTTGATTTTTATGCATGTTTTTTTGCACTCATTCAAAGAGATAGAACTGAAAGGTGGATGCCTATGCCGCGTGGTATATAAAATGTGGAGAGTGTTTGATTGATTGGTGAGTTACGCTAATTTTTATCTATATAAATCAAATTGTTAATCCCTGCGTACCAATCCACCTTTCGCGGTGCTATATTTTTTCTTAAAAAGGTGAACTTGCTCTATTGATAGAGTTCACCTTTGTGCTATCCTGTCTGCTGTTTATTGAGGTATAAGGATATATGC

AT-rich region

The information of repeat sequences

Motif AAWAGTGAACGCCTTTGCCGG

Start	P-value		Site
919	8.31e-14	AAAAAATGCG	AAAAGTGAACGCCTTTGCCGG	AAGTGGTGAA
864	8.31e-14	TTGAAAAATA	AAAAGTGAACGCCTTTGCCGG	AAATAGTGAA
886	1.88e-13	CTTTGCCGGA	AATAGTGAACGCCTTTGCCGG	AAAAAAAATG
972	6.21e-13	AAAAAAAACA	AAAAGTGAACGCCTTTGCCGT	TTCTTTGCTT
941	9.08e-13	CTTTGCCGGA	AGTGGTGAACGCCTTTGCCGG	AAAAAAAACA

Motif GAAAGGTGAAHVCVTDTGCCG

Start	P-value		Site
1261	1.02e-12	AGATAGAACT	GAAAGGTGGATGCCTATGCCG	CGTGGTATAT
1147	2.44e-12	CTGTGCCGTT	GAAAGGTGAATGCATATGCCG	TGTGATTATT
1124	1.70e-10	AGAACCTCAC	CAAAGGTGAACATCTGTGCCG	TTGAAAGGTG
465	3.34e-10	CTGGTTTTGA	GAAAGGAGACACCGCTCGCCG	CAGTCAAACG

Motif AACGCBTTADAAHGCBVTKYADCGCDTTYTRRBSG

Start	P-value		Site
107	7.34e-17	TCTTTCCGAC	ATCGCCTTAAAACGCTCTGTAACGCGTTCTGAGCG	TTTTTTCCCG
296	5.80e-15	GTTTTGTAAA	TACCCTCTAAAATGCGCTGTATCGCATTCTGAGCG	ATTTTTTCGA
176	2.11e-14	GCTACGGTTT	AACGGTTTTTAACGCCGCTCAACGCTTTTTAGCGG	CCTTGTTGCT
374	3.29e-13	TACATCGAAC	AAAGCGTTAGAAAGCGATTCAGGGCTTCTCAGTGA	AAGATCCAAA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000421	100.0	1485	0	0	1	1485	1	1485	0.0	2743
pORI00000702	94.842	853	39	5	1	851	1232	383	0.0	1327
pORI00000031	94.706	850	41	4	1	848	1	848	0.0	1317
pORI00000072	95.646	666	28	1	1	666	1061	397	0.0	1068
pORI00000990	95.468	662	29	1	6	666	148	809	0.0	1055
pORI00001057	93.455	657	39	4	198	851	1038	383	0.0	972
pORI00000921	93.588	655	36	5	198	848	1	653	0.0	972
pORI00000446	93.588	655	36	5	198	848	1	653	0.0	972
pORI00000947	93.171	659	39	4	198	851	1062	405	0.0	963
pORI00000834	85.393	712	85	17	116	818	1232	531	0.0	721
pORI00001062	89.58	547	52	4	122	666	1000	457	0.0	689
pORI00001164	85.857	601	71	13	225	818	1124	531	0.0	627
pORI00001144	85.333	600	76	11	225	818	1	594	0.0	610
pORI00001056	85.333	600	76	11	225	818	1124	531	0.0	610
pORI00001020	85.333	600	76	11	225	818	1	594	0.0	610
pORI00001011	85.333	600	76	11	225	818	1124	531	0.0	610
pORI00000595	93.243	148	6	3	1	147	1	145	0.0	215
pORI00000595	92.857	70	3	1	462	531	642	709	6.6e-22	100
pORI00000914	92.568	148	7	3	1	147	1	145	0.0	209
pORI00000914	92.857	70	3	1	462	531	642	709	6.6e-22	100
pORI00000478	92.857	70	3	1	462	531	286	353	6.6e-22	100