DoriC

RefSeq

NC_013971.1

Accession number

NC_013971.1

DoriC accession number

ORI93020116

OriC length

498 nt

OriC AT content

0.536145

The location of oriC region

3805408..31 nt

Browse in NCBI

OriC map

OriC sequences

gidAGGTACTGCACCTCGCGGCTTGTGCGAATTAAGGGACGTTGCTGAGGGCGTGGATTCTACTCAACTTTAGACGATGGGGAAAGCATCGGGATCGTCGTGTATTAAAAAGAAGATCTTTTTTATTTAGAGATCTCTTTATTAGATCTTCTATTAGGATCGACGATCTCTGTGGATAACCCTTTTTTACTGATAACGATCAACTTATTAGAGACGATCGTTAGCTGTTAACGACCGGTGATCCCGATCCGTATAAGCTGGGATCTAAATGGCATGTTATGCACAGGCTCCGCCAGGATGCCAAGTTGTTATTGGCATAACAACCGGTTTTCACCCGGTAATTAGCTATGTTATCCACAGAAATAAGTGTGAGAAAGCCTCAAAAAAGAGCGATATTTACAAAAGGGGGCGTGGGCAACGCAGGTTCAAAGGATCGAAAAGGCGATCGCTGCCCGATCGCCTCCCTGTTCAAAAGGCGATCGCTGCCCGATCGCCTCCCTGTmioC

gidaGGTACTGCACCTCGCGGCTTGTGCGAATTAAGGGACGTTGCTGAGGGCGTGGATTCTACTCAACTTTAGACGATGGGGAAAGCATCGGGATCGTCGTGTATTAAAAAGAAGATCTTTTTTATTTAGAGATCTCTTTATTAGATCTTCTATTAGGATCGACGATCTCTGTGGATAACCCTTTTTTACTGATAACGATCAACTTATTAGAGACGATCGTTAGCTGTTAACGACCGGTGATCCCGATCCGTATAAGCTGGGATCTAAATGGCATGTTATGCACAGGCTCCGCCAGGATGCCAAGTTGTTATTGGCATAACAACCGGTTTTCACCCGGTAATTAGCTATGTTATCCACAGAAATAAGTGTGAGAAAGCCTCAAAAAAGAGCGATATTTACAAAAGGGGGCGTGGGCAACGCAGGTTCAAAGGATCGAAAAGGCGATCGCTGCCCGATCGCCTCCCTGTTCAAAAGGCGATCGCTGCCCGATCGCCTCCCTGTmioc

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif CGATCGCYKCC

Start	P-value		Site
473	1.37e-07	GTTCAAAAGG	CGATCGCTGCC	CGATCGCCTC
439	1.37e-07	ATCGAAAAGG	CGATCGCTGCC	CGATCGCCTC
484	5.13e-07	GATCGCTGCC	CGATCGCCTCC	CTGT
450	5.13e-07	GATCGCTGCC	CGATCGCCTCC	CTGTTCAAAA
160	4.60e-06	TTAGGATCGA	CGATCTCTGTG	GATAACCCTT

Motif CRMCCGGT

Start	P-value		Site
317	1.18e-05	ATTGGCATAA	CAACCGGT	TTTCACCCGG
328	2.13e-05	AACCGGTTTT	CACCCGGT	AATTAGCTAT
228	3.24e-05	TAGCTGTTAA	CGACCGGT	GATCCCGATC

Motif GGATCG

Start	P-value		Site
427	2.38e-04	CAGGTTCAAA	GGATCG	AAAAGGCGAT
153	2.38e-04	TCTTCTATTA	GGATCG	ACGATCTCTG
88	2.38e-04	GAAAGCATCG	GGATCG	TCGTGTATTA
211	4.44e-04	TTATTAGAGA	CGATCG	TTAGCTGTTA

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI93020116	100.0	498	0	0	1	498	1	498	0.0	920
ORI93020116	100.0	32	0	0	467	498	433	464	4.72e-10	60
ORI93020116	100.0	32	0	0	433	464	467	498	4.72e-10	60
ORI93020115	100.0	464	0	0	1	464	1	464	0.0	857
ORI93020115	100.0	32	0	0	467	498	433	464	4.72e-10	60
ORI96000391	90.889	461	38	4	1	458	1	460	0.0	616
ORI92520062	89.604	404	34	8	1	400	1	400	0.0	507
ORI94030311	82.967	364	45	14	1	355	1	356	0.0	313
ORI92220054	79.048	315	50	16	49	355	332	26	0.0	202
ORI10020019	77.778	342	55	19	1	332	1	331	0.0	191
ORI96000376	77.485	342	56	19	1	332	380	50	0.0	185
ORI96000375	77.485	342	56	19	1	332	1	331	0.0	185
ORI96000374	77.485	342	56	19	1	332	1	331	0.0	185
ORI93020117	77.485	342	56	19	1	332	1	331	0.0	185
ORI92520061	77.551	343	54	21	1	332	380	50	0.0	185
ORI92020050	77.485	342	56	19	1	332	1	331	0.0	185
ORI90020045	77.485	342	56	19	1	332	380	50	0.0	185
ORI20020031	77.485	342	56	19	1	332	1	331	0.0	185
ORI20020030	77.485	342	56	19	1	332	1	331	0.0	185
ORI80020043	78.694	291	48	12	1	284	1	284	0.0	182
ORI92320057	77.193	342	57	19	1	332	380	50	0.0	180
ORI92220056	78.621	290	45	16	51	332	51	331	4.2039e-45	176
ORI10020008	76.744	344	56	21	1	332	1	332	2.08793e-43	171
ORI96020516	79.6	250	38	13	88	332	21	262	2.71011e-42	167
ORI10020018	79.6	250	38	13	88	332	9	250	2.71011e-42	167
ORI10030027	79.6	250	38	13	88	332	9	250	2.71011e-42	167
ORI96000387	79.736	227	30	12	109	327	270	52	2.73e-37	150
ORI93020109	79.736	227	30	12	109	327	270	52	2.73e-37	150
ORI93020091	80.447	179	27	7	109	283	270	96	3.55e-31	130