RefSeq NC_015061.1
Accession number NC_015061.1
DoriC accession number ORI94030349
OriC length 379 nt
OriC AT content 0.585752
The location of oriC region 4830402..4830780 nt
Browse in NCBI
OriC map
OriC sequences
mioCGTGTAAATTTCAGGCGATCAGATGTGGATAACTATGCTTAAAAGCAGGGTAAAACCCGTAGTTATCCCTCTAACAACTCCTGTACGCTTTTCATGCTGTGCATAACTCTCACTTCTGATCCCAGCTTATACTGTCCAGGATCACCGATCATTCACAGCATTCGATCCTTCTTAGCATACTGATCTTCATAAACAAAAAAGACTTATGCACAGAGGATCGCGATCCTAATAGAAGTATTAATAAGAGATCTTTAAATAAAAAAGATCTTCTTTTAATTAGTGAAGATCCCCGGGGACTTGTGGAAGCTCAAAACTTGAGTAGAATCCCTCCTCCCAACGCCATACAAAGAAAGTTCGCTTGAACGCCGAGGTGCAGTCGCgidA
mioCGTGTAAATTTCAGGCGATCAGATGTGGATAACTATGCTTAAAAGCAGGGTAAAACCCGTAGTTATCCCTCTAACAACTCCTGTACGCTTTTCATGCTGTGCATAACTCTCACTTCTGATCCCAGCTTATACTGTCCAGGATCACCGATCATTCACAGCATTCGATCCTTCTTAGCATACTGATCTTCATAAACAAAAAAGACTTATGCACAGAGGATCGCGATCCTAATAGAAGTATTAATAAGAGATCTTTAAATAAAAAAGATCTTCTTTTAATTAGTGAAGATCCCCGGGGACTTGTGGAAGCTCAAAACTTGAGTAGAATCCCTCCTCCCAACGCCATACAAAGAAAGTTCGCTTGAACGCCGAGGTGCAGTCGCgidA
mioCGTGTAAATTTCAGGCGATCAGATGTGGATAACTATGCTTAAAAGCAGGGTAAAACCCGTAGTTATCCCTCTAACAACTCCTGTACGCTTTTCATGCTGTGCATAACTCTCACTTCTGATCCCAGCTTATACTGTCCAGGATCACCGATCATTCACAGCATTCGATCCTTCTTAGCATACTGATCTTCATAAACAAAAAAGACTTATGCACAGAGGATCGCGATCCTAATAGAAGTATTAATAAGAGATCTTTAAATAAAAAAGATCTTCTTTTAATTAGTGAAGATCCCCGGGGACTTGTGGAAGCTCAAAACTTGAGTAGAATCCCTCCTCCCAACGCCATACAAAGAAAGTTCGCTTGAACGCCGAGGTGCAGTCGCgidA
mioCGTGTAAATTTCAGGCGATCAGATGTGGATAACTATGCTTAAAAGCAGGGTAAAACCCGTAGTTATCCCTCTAACAACTCCTGTACGCTTTTCATGCTGTGCATAACTCTCACTTCTGATCCCAGCTTATACTGTCCAGGATCACCGATCATTCACAGCATTCGATCCTTCTTAGCATACTGATCTTCATAAACAAAAAAGACTTATGCACAGAGGATCGCGATCCTAATAGAAGTATTAATAAGAGATCTTTAAATAAAAAAGATCTTCTTTTAATTAGTGAAGATCCCCGGGGACTTGTGGAAGCTCAAAACTTGAGTAGAATCCCTCCTCCCAACGCCATACAAAGAAAGTTCGCTTGAACGCCGAGGTGCAGTCGCgidA
mioCGTGTAAATTTCAGGCGATCAGATGTGGATAACTATGCTTAAAAGCAGGGTAAAACCCGTAGTTATCCCTCTAACAACTCCTGTACGCTTTTCATGCTGTGCATAACTCTCACTTCTGATCCCAGCTTATACTGTCCAGGATCACCGATCATTCACAGCATTCGATCCTTCTTAGCATACTGATCTTCATAAACAAAAAAGACTTATGCACAGAGGATCGCGATCCTAATAGAAGTATTAATAAGAGATCTTTAAATAAAAAAGATCTTCTTTTAATTAGTGAAGATCCCCGGGGACTTGTGGAAGCTCAAAACTTGAGTAGAATCCCTCCTCCCAACGCCATACAAAGAAAGTTCGCTTGAACGCCGAGGTGCAGTCGCgidA
mioCGTGTAAATTTCAGGCGATCAGATGTGGATAACTATGCTTAAAAGCAGGGTAAAACCCGTAGTTATCCCTCTAACAACTCCTGTACGCTTTTCATGCTGTGCATAACTCTCACTTCTGATCCCAGCTTATACTGTCCAGGATCACCGATCATTCACAGCATTCGATCCTTCTTAGCATACTGATCTTCATAAACAAAAAAGACTTATGCACAGAGGATCGCGATCCTAATAGAAGTATTAATAAGAGATCTTTAAATAAAAAAGATCTTCTTTTAATTAGTGAAGATCCCCGGGGACTTGTGGAAGCTCAAAACTTGAGTAGAATCCCTCCTCCCAACGCCATACAAAGAAAGTTCGCTTGAACGCCGAGGTGCAGTCGCgidA
mioCGTGTAAATTTCAGGCGATCAGATGTGGATAACTATGCTTAAAAGCAGGGTAAAACCCGTAGTTATCCCTCTAACAACTCCTGTACGCTTTTCATGCTGTGCATAACTCTCACTTCTGATCCCAGCTTATACTGTCCAGGATCACCGATCATTCACAGCATTCGATCCTTCTTAGCATACTGATCTTCATAAACAAAAAAGACTTATGCACAGAGGATCGCGATCCTAATAGAAGTATTAATAAGAGATCTTTAAATAAAAAAGATCTTCTTTTAATTAGTGAAGATCCCCGGGGACTTGTGGAAGCTCAAAACTTGAGTAGAATCCCTCCTCCCAACGCCATACAAAGAAAGTTCGCTTGAACGCCGAGGTGCAGTCGCgidA
miocGTGTAAATTTCAGGCGATCAGATGTGGATAACTATGCTTAAAAGCAGGGTAAAACCCGTAGTTATCCCTCTAACAACTCCTGTACGCTTTTCATGCTGTGCATAACTCTCACTTCTGATCCCAGCTTATACTGTCCAGGATCACCGATCATTCACAGCATTCGATCCTTCTTAGCATACTGATCTTCATAAACAAAAAAGACTTATGCACAGAGGATCGCGATCCTAATAGAAGTATTAATAAGAGATCTTTAAATAAAAAAGATCTTCTTTTAATTAGTGAAGATCCCCGGGGACTTGTGGAAGCTCAAAACTTGAGTAGAATCCCTCCTCCCAACGCCATACAAAGAAAGTTCGCTTGAACGCCGAGGTGCAGTCGCgida
mioCGTGTAAATTTCAGGCGATCAGATGTGGATAACTATGCTTAAAAGCAGGGTAAAACCCGTAGTTATCCCTCTAACAACTCCTGTACGCTTTTCATGCTGTGCATAACTCTCACTTCTGATCCCAGCTTATACTGTCCAGGATCACCGATCATTCACAGCATTCGATCCTTCTTAGCATACTGATCTTCATAAACAAAAAAGACTTATGCACAGAGGATCGCGATCCTAATAGAAGTATTAATAAGAGATCTTTAAATAAAAAAGATCTTCTTTTAATTAGTGAAGATCCCCGGGGACTTGTGGAAGCTCAAAACTTGAGTAGAATCCCTCCTCCCAACGCCATACAAAGAAAGTTCGCTTGAACGCCGAGGTGCAGTCGCgidA
mioCGTGTAAATTTCAGGCGATCAGATGTGGATAACTATGCTTAAAAGCAGGGTAAAACCCGTAGTTATCCCTCTAACAACTCCTGTACGCTTTTCATGCTGTGCATAACTCTCACTTCTGATCCCAGCTTATACTGTCCAGGATCACCGATCATTCACAGCATTCGATCCTTCTTAGCATACTGATCTTCATAAACAAAAAAGACTTATGCACAGAGGATCGCGATCCTAATAGAAGTATTAATAAGAGATCTTTAAATAAAAAAGATCTTCTTTTAATTAGTGAAGATCCCCGGGGACTTGTGGAAGCTCAAAACTTGAGTAGAATCCCTCCTCCCAACGCCATACAAAGAAAGTTCGCTTGAACGCCGAGGTGCAGTCGCgidA
mioCGTGTAAATTTCAGGCGATCAGATGTGGATAACTATGCTTAAAAGCAGGGTAAAACCCGTAGTTATCCCTCTAACAACTCCTGTACGCTTTTCATGCTGTGCATAACTCTCACTTCTGATCCCAGCTTATACTGTCCAGGATCACCGATCATTCACAGCATTCGATCCTTCTTAGCATACTGATCTTCATAAACAAAAAAGACTTATGCACAGAGGATCGCGATCCTAATAGAAGTATTAATAAGAGATCTTTAAATAAAAAAGATCTTCTTTTAATTAGTGAAGATCCCCGGGGACTTGTGGAAGCTCAAAACTTGAGTAGAATCCCTCCTCCCAACGCCATACAAAGAAAGTTCGCTTGAACGCCGAGGTGCAGTCGCgidA
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif GCTYRAAMSYHGRGKWRMABYCS

StartP-valueSite
361.12e-11GGATAACTATGCTTAAAAGCAGGGTAAAACCCGTAGTTATCCC
3563.46e-11AAGAAAGTTCGCTTGAACGCCGAGGTGCAGTCGC
3051.23e-10ACTTGTGGAAGCTCAAAACTTGAGTAGAATCCCTCCTCCCAAC

Motif GATCHT

StartP-valueSite
2212.28e-04AGAGGATCGCGATCCTAATAGAAGTA
1632.28e-04CACAGCATTCGATCCTTCTTAGCATA
2464.96e-04ATTAATAAGAGATCTTTAAATAAAAA
1814.96e-04TTAGCATACTGATCTTCATAAACAAA
1468.03e-04CAGGATCACCGATCATTCACAGCATT

Motif TGTGSA

StartP-valueSite
2981.42e-04CCCGGGGACTTGTGGAAGCTCAAAAC
231.42e-04GGCGATCAGATGTGGATAACTATGCT
973.22e-04CTTTTCATGCTGTGCATAACTCTCAC
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI96000370 100.0 379 0 0 1 379 1 379 0.0 701
ORI94030349 100.0 379 0 0 1 379 1 379 0.0 701
ORI95030439 98.417 379 6 0 1 379 1 379 0.0 667
ORI92220054 78.846 364 56 20 23 376 26 378 0.0 226
ORI92520061 78.022 364 60 20 22 376 25 377 0.0 211
ORI96000376 77.747 364 61 20 22 376 25 377 0.0 206
ORI96000375 77.747 364 61 20 22 376 356 4 0.0 206
ORI96000374 77.747 364 61 20 22 376 356 4 0.0 206
ORI93020117 77.747 364 61 20 22 376 356 4 0.0 206
ORI92320057 77.686 363 63 18 22 376 25 377 0.0 206
ORI92020050 77.747 364 61 20 22 376 356 4 0.0 206
ORI90020045 77.747 364 61 20 22 376 25 377 0.0 206
ORI20020031 77.747 364 61 20 22 376 356 4 0.0 206
ORI20020030 77.747 364 61 20 22 376 356 4 0.0 206
ORI10020019 77.747 364 61 20 22 376 356 4 0.0 206
ORI10020008 77.049 366 61 22 22 376 357 4 0.0 189
ORI96020516 79.245 265 39 16 22 278 287 31 1.56945e-43 171
ORI10020018 79.245 265 39 16 22 278 275 19 1.56945e-43 171
ORI10030027 79.245 265 39 16 22 278 275 19 1.56945e-43 171
ORI96000435 77.16 324 53 19 22 335 369 57 5.64723e-43 169
ORI90020046 75.075 333 58 20 7 326 1 321 7.41e-32 132
ORI10020016 75.769 260 56 7 23 278 355 99 1.24e-29 124
ORI92720079 81.667 120 16 6 53 169 326 210 9.73e-21 95