RefSeq NC_013961.1
Accession number NC_013961.1
DoriC accession number ORI93020115
OriC length 464 nt
OriC AT content 0.547414
The location of oriC region 3805141..31 nt
Browse in NCBI
OriC map
OriC sequences
gidAGGTACTGCACCTCGCGGCTTGTGCGAATTAAGGGACGTTGCTGAGGGCGTGGATTCTACTCAACTTTAGACGATGGGGAAAGCATCGGGATCGTCGTGTATTAAAAAGAAGATCTTTTTTATTTAGAGATCTCTTTATTAGATCTTCTATTAGGATCGACGATCTCTGTGGATAACCCTTTTTTACTGATAACGATCAACTTATTAGAGACGATCGTTAGCTGTTAACGACCGGTGATCCCGATCCGTATAAGCTGGGATCTAAATGGCATGTTATGCACAGGCTCCGCCAGGATGCCAAGTTGTTATTGGCATAACAACCGGTTTTCACCCGGTAATTAGCTATGTTATCCACAGAAATAAGTGTGAGAAAGCCTCAAAAAAGAGCGATATTTACAAAAGGGGGCGTGGGCAACGCAGGTTCAAAGGATCGAAAAGGCGATCGCTGCCCGATCGCCTCCCTGTmioC
gidAGGTACTGCACCTCGCGGCTTGTGCGAATTAAGGGACGTTGCTGAGGGCGTGGATTCTACTCAACTTTAGACGATGGGGAAAGCATCGGGATCGTCGTGTATTAAAAAGAAGATCTTTTTTATTTAGAGATCTCTTTATTAGATCTTCTATTAGGATCGACGATCTCTGTGGATAACCCTTTTTTACTGATAACGATCAACTTATTAGAGACGATCGTTAGCTGTTAACGACCGGTGATCCCGATCCGTATAAGCTGGGATCTAAATGGCATGTTATGCACAGGCTCCGCCAGGATGCCAAGTTGTTATTGGCATAACAACCGGTTTTCACCCGGTAATTAGCTATGTTATCCACAGAAATAAGTGTGAGAAAGCCTCAAAAAAGAGCGATATTTACAAAAGGGGGCGTGGGCAACGCAGGTTCAAAGGATCGAAAAGGCGATCGCTGCCCGATCGCCTCCCTGTmioC
gidAGGTACTGCACCTCGCGGCTTGTGCGAATTAAGGGACGTTGCTGAGGGCGTGGATTCTACTCAACTTTAGACGATGGGGAAAGCATCGGGATCGTCGTGTATTAAAAAGAAGATCTTTTTTATTTAGAGATCTCTTTATTAGATCTTCTATTAGGATCGACGATCTCTGTGGATAACCCTTTTTTACTGATAACGATCAACTTATTAGAGACGATCGTTAGCTGTTAACGACCGGTGATCCCGATCCGTATAAGCTGGGATCTAAATGGCATGTTATGCACAGGCTCCGCCAGGATGCCAAGTTGTTATTGGCATAACAACCGGTTTTCACCCGGTAATTAGCTATGTTATCCACAGAAATAAGTGTGAGAAAGCCTCAAAAAAGAGCGATATTTACAAAAGGGGGCGTGGGCAACGCAGGTTCAAAGGATCGAAAAGGCGATCGCTGCCCGATCGCCTCCCTGTmioC
gidAGGTACTGCACCTCGCGGCTTGTGCGAATTAAGGGACGTTGCTGAGGGCGTGGATTCTACTCAACTTTAGACGATGGGGAAAGCATCGGGATCGTCGTGTATTAAAAAGAAGATCTTTTTTATTTAGAGATCTCTTTATTAGATCTTCTATTAGGATCGACGATCTCTGTGGATAACCCTTTTTTACTGATAACGATCAACTTATTAGAGACGATCGTTAGCTGTTAACGACCGGTGATCCCGATCCGTATAAGCTGGGATCTAAATGGCATGTTATGCACAGGCTCCGCCAGGATGCCAAGTTGTTATTGGCATAACAACCGGTTTTCACCCGGTAATTAGCTATGTTATCCACAGAAATAAGTGTGAGAAAGCCTCAAAAAAGAGCGATATTTACAAAAGGGGGCGTGGGCAACGCAGGTTCAAAGGATCGAAAAGGCGATCGCTGCCCGATCGCCTCCCTGTmioC
gidAGGTACTGCACCTCGCGGCTTGTGCGAATTAAGGGACGTTGCTGAGGGCGTGGATTCTACTCAACTTTAGACGATGGGGAAAGCATCGGGATCGTCGTGTATTAAAAAGAAGATCTTTTTTATTTAGAGATCTCTTTATTAGATCTTCTATTAGGATCGACGATCTCTGTGGATAACCCTTTTTTACTGATAACGATCAACTTATTAGAGACGATCGTTAGCTGTTAACGACCGGTGATCCCGATCCGTATAAGCTGGGATCTAAATGGCATGTTATGCACAGGCTCCGCCAGGATGCCAAGTTGTTATTGGCATAACAACCGGTTTTCACCCGGTAATTAGCTATGTTATCCACAGAAATAAGTGTGAGAAAGCCTCAAAAAAGAGCGATATTTACAAAAGGGGGCGTGGGCAACGCAGGTTCAAAGGATCGAAAAGGCGATCGCTGCCCGATCGCCTCCCTGTmioC
gidAGGTACTGCACCTCGCGGCTTGTGCGAATTAAGGGACGTTGCTGAGGGCGTGGATTCTACTCAACTTTAGACGATGGGGAAAGCATCGGGATCGTCGTGTATTAAAAAGAAGATCTTTTTTATTTAGAGATCTCTTTATTAGATCTTCTATTAGGATCGACGATCTCTGTGGATAACCCTTTTTTACTGATAACGATCAACTTATTAGAGACGATCGTTAGCTGTTAACGACCGGTGATCCCGATCCGTATAAGCTGGGATCTAAATGGCATGTTATGCACAGGCTCCGCCAGGATGCCAAGTTGTTATTGGCATAACAACCGGTTTTCACCCGGTAATTAGCTATGTTATCCACAGAAATAAGTGTGAGAAAGCCTCAAAAAAGAGCGATATTTACAAAAGGGGGCGTGGGCAACGCAGGTTCAAAGGATCGAAAAGGCGATCGCTGCCCGATCGCCTCCCTGTmioC
gidAGGTACTGCACCTCGCGGCTTGTGCGAATTAAGGGACGTTGCTGAGGGCGTGGATTCTACTCAACTTTAGACGATGGGGAAAGCATCGGGATCGTCGTGTATTAAAAAGAAGATCTTTTTTATTTAGAGATCTCTTTATTAGATCTTCTATTAGGATCGACGATCTCTGTGGATAACCCTTTTTTACTGATAACGATCAACTTATTAGAGACGATCGTTAGCTGTTAACGACCGGTGATCCCGATCCGTATAAGCTGGGATCTAAATGGCATGTTATGCACAGGCTCCGCCAGGATGCCAAGTTGTTATTGGCATAACAACCGGTTTTCACCCGGTAATTAGCTATGTTATCCACAGAAATAAGTGTGAGAAAGCCTCAAAAAAGAGCGATATTTACAAAAGGGGGCGTGGGCAACGCAGGTTCAAAGGATCGAAAAGGCGATCGCTGCCCGATCGCCTCCCTGTmioC
gidaGGTACTGCACCTCGCGGCTTGTGCGAATTAAGGGACGTTGCTGAGGGCGTGGATTCTACTCAACTTTAGACGATGGGGAAAGCATCGGGATCGTCGTGTATTAAAAAGAAGATCTTTTTTATTTAGAGATCTCTTTATTAGATCTTCTATTAGGATCGACGATCTCTGTGGATAACCCTTTTTTACTGATAACGATCAACTTATTAGAGACGATCGTTAGCTGTTAACGACCGGTGATCCCGATCCGTATAAGCTGGGATCTAAATGGCATGTTATGCACAGGCTCCGCCAGGATGCCAAGTTGTTATTGGCATAACAACCGGTTTTCACCCGGTAATTAGCTATGTTATCCACAGAAATAAGTGTGAGAAAGCCTCAAAAAAGAGCGATATTTACAAAAGGGGGCGTGGGCAACGCAGGTTCAAAGGATCGAAAAGGCGATCGCTGCCCGATCGCCTCCCTGTmioc
gidAGGTACTGCACCTCGCGGCTTGTGCGAATTAAGGGACGTTGCTGAGGGCGTGGATTCTACTCAACTTTAGACGATGGGGAAAGCATCGGGATCGTCGTGTATTAAAAAGAAGATCTTTTTTATTTAGAGATCTCTTTATTAGATCTTCTATTAGGATCGACGATCTCTGTGGATAACCCTTTTTTACTGATAACGATCAACTTATTAGAGACGATCGTTAGCTGTTAACGACCGGTGATCCCGATCCGTATAAGCTGGGATCTAAATGGCATGTTATGCACAGGCTCCGCCAGGATGCCAAGTTGTTATTGGCATAACAACCGGTTTTCACCCGGTAATTAGCTATGTTATCCACAGAAATAAGTGTGAGAAAGCCTCAAAAAAGAGCGATATTTACAAAAGGGGGCGTGGGCAACGCAGGTTCAAAGGATCGAAAAGGCGATCGCTGCCCGATCGCCTCCCTGTmioC
gidAGGTACTGCACCTCGCGGCTTGTGCGAATTAAGGGACGTTGCTGAGGGCGTGGATTCTACTCAACTTTAGACGATGGGGAAAGCATCGGGATCGTCGTGTATTAAAAAGAAGATCTTTTTTATTTAGAGATCTCTTTATTAGATCTTCTATTAGGATCGACGATCTCTGTGGATAACCCTTTTTTACTGATAACGATCAACTTATTAGAGACGATCGTTAGCTGTTAACGACCGGTGATCCCGATCCGTATAAGCTGGGATCTAAATGGCATGTTATGCACAGGCTCCGCCAGGATGCCAAGTTGTTATTGGCATAACAACCGGTTTTCACCCGGTAATTAGCTATGTTATCCACAGAAATAAGTGTGAGAAAGCCTCAAAAAAGAGCGATATTTACAAAAGGGGGCGTGGGCAACGCAGGTTCAAAGGATCGAAAAGGCGATCGCTGCCCGATCGCCTCCCTGTmioC
gidAGGTACTGCACCTCGCGGCTTGTGCGAATTAAGGGACGTTGCTGAGGGCGTGGATTCTACTCAACTTTAGACGATGGGGAAAGCATCGGGATCGTCGTGTATTAAAAAGAAGATCTTTTTTATTTAGAGATCTCTTTATTAGATCTTCTATTAGGATCGACGATCTCTGTGGATAACCCTTTTTTACTGATAACGATCAACTTATTAGAGACGATCGTTAGCTGTTAACGACCGGTGATCCCGATCCGTATAAGCTGGGATCTAAATGGCATGTTATGCACAGGCTCCGCCAGGATGCCAAGTTGTTATTGGCATAACAACCGGTTTTCACCCGGTAATTAGCTATGTTATCCACAGAAATAAGTGTGAGAAAGCCTCAAAAAAGAGCGATATTTACAAAAGGGGGCGTGGGCAACGCAGGTTCAAAGGATCGAAAAGGCGATCGCTGCCCGATCGCCTCCCTGTmioC
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif CGATCKCT

StartP-valueSite
4391.08e-05ATCGAAAAGGCGATCGCTGCCCGATCGC
1602.25e-05TTAGGATCGACGATCTCTGTGGATAACC
4503.05e-05GATCGCTGCCCGATCGCCTCCCTGT
2116.83e-05TTATTAGAGACGATCGTTAGCTGTTAAC
1271.00e-04TTTTATTTAGAGATCTCTTTATTAGATC

Motif CRMCCGGT

StartP-valueSite
3171.08e-05ATTGGCATAACAACCGGTTTTCACCCGG
3281.87e-05AACCGGTTTTCACCCGGTAATTAGCTAT
2282.85e-05TAGCTGTTAACGACCGGTGATCCCGATC

Motif GGGCGTGG

StartP-valueSite
4031.36e-05TTACAAAAGGGGGCGTGGGCAACGCAGG
451.36e-05ACGTTGCTGAGGGCGTGGATTCTACTCA
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI93020116 100.0 464 0 0 1 464 1 464 0.0 857
ORI93020116 100.0 32 0 0 433 464 467 498 4.39e-10 60
ORI93020115 100.0 464 0 0 1 464 1 464 0.0 857
ORI96000391 90.889 461 38 4 1 458 1 460 0.0 616
ORI92520062 89.604 404 34 8 1 400 1 400 0.0 507
ORI94030311 82.967 364 45 14 1 355 1 356 0.0 313
ORI92220054 79.048 315 50 16 49 355 332 26 0.0 202
ORI10020019 77.778 342 55 19 1 332 1 331 0.0 191
ORI96000376 77.485 342 56 19 1 332 380 50 0.0 185
ORI96000375 77.485 342 56 19 1 332 1 331 0.0 185
ORI96000374 77.485 342 56 19 1 332 1 331 0.0 185
ORI93020117 77.485 342 56 19 1 332 1 331 0.0 185
ORI92520061 77.551 343 54 21 1 332 380 50 0.0 185
ORI92020050 77.485 342 56 19 1 332 1 331 0.0 185
ORI90020045 77.485 342 56 19 1 332 380 50 0.0 185
ORI20020031 77.485 342 56 19 1 332 1 331 0.0 185
ORI20020030 77.485 342 56 19 1 332 1 331 0.0 185
ORI80020043 78.694 291 48 12 1 284 1 284 0.0 182
ORI92320057 77.193 342 57 19 1 332 380 50 0.0 180
ORI92220056 78.621 290 45 16 51 332 51 331 4.2039e-45 176
ORI10020008 76.744 344 56 21 1 332 1 332 1.93379e-43 171
ORI96020516 79.6 250 38 13 88 332 21 262 2.50973e-42 167
ORI10020018 79.6 250 38 13 88 332 9 250 2.50973e-42 167
ORI10030027 79.6 250 38 13 88 332 9 250 2.50973e-42 167
ORI96000387 79.736 227 30 12 109 327 270 52 2.53e-37 150
ORI93020109 79.736 227 30 12 109 327 270 52 2.53e-37 150
ORI93020091 80.447 179 27 7 109 283 270 96 3.3e-31 130