DoriC

RefSeq

NC_004992

DoriC accession number

pORI00000215

OriC length

1802 nt

OriC AT content

0.6282

The location of oriC region

2762..1637 nt

Browse in NCBI

OriC map

OriC sequences

TTTTTAATTTGGTATGTAGCCGTAGCCCTGCATGAGCGAGAGCGCTACTAACTAGCCTTAAAGTTACGTAAAAAAACAGCCAAAATTTTCGATAACGAGAGCGGAATTTTTCGTCAGAAAAATAAGCGGTGGGGTCTGTCCCACTGGCAAGGCGTCCCTCTGAAAGAGCTCACACTTTATAACATAAAGTATAGTGAGTTATACTTCGATGCCGTTTATCAGGAACGTAAGTACGGCAGAGAGGACATAAACAAAGAGACTGGTGAGATACAAAATTAATTATAAAATGGGAAGTGGGTGCTCAAAATGAGCGCCCTTTTTTGTTGCGGCTAGCCGACTTCTGATACATTTTTTAAGCACAAAAACCACCCAATTTTGGAGTGGTGTGTAAGTGCGCATTGCTTTAAAAATAGCAATGAAAAAATCATTGCTTAGAAGTTATACAAGATTAAAAAATAAGTTGCTTTATTGACGTTGAGCTTCGGAATCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTACGCCGACATTCGTCTTCAAGTTTAGTTAAGGGTTCTTCTCAACATAAATAAATTTTCTCGGCATAAATGTGTCATAAAACTAATAGAAAAAGTGCATTATAGTCATAATCAAAGTTAATAAACAAGCTAATAACGTAACATTACGAGCTTTGGTTGTGTTCTGATTCCCATTTCTATATTCTTTCATAACAAATAACCAAGAAAGAATTACTAAAATTCCTAAAATAATTGCAAAAATTTTCATTTTTAAAACTCCTTTTTAGTAAACTTTATCACAATAGTTATCGATTTACAGGTCTATTTTTGTCGTTATGATTTAGTTAAGTCCCATAAGGGTGCACTTATACTCTAAATAAATTGGAGTTGTGCTAAAACACTTGAACCTGTATCAGATTTCACTTTGCTCAAACAAAACTGACTTTCGTCAGTTGGAATCTTCAAAGCCGATAAAGTCCAGTCGCCAACTCCTCCAGACTTATCGGCTTTGAAGATTGCTTTTAAATGCCTCTAATTTGCTCTCTAAGCCATTTTAGCTGTTACCTGTATAATTTACTGTCCGTCAACGGTAAATCGACGTAGAACGGCTTTTAGCCGTTCTGGGAGGCTTTAAGGAGTTGACGGACTCGCTAGGCCAAGACACTTTTGCGCATGCAAAGAAAAGCAACCCTGCTTTTTTTGCCTGCCTCACGGCGAGTGCGGGGTGAGTTTGAGCGGGGGCTCCCTATCTATAGGCGGTCAAGCTGGCGCACGTTGGACTGGGTTTGGGGCGTCAACCATGATTTTGATTTGGTTTGAGTGGGATAAAAATTGGGAGAAAAACATGGGGGTACTACAACACCCCCCTATGTGGTCATTTGGTCATTTGGTCAAAATGGCTAGAAACGTTGATATGACATGGCTCAATTTTTGAACCACAAAATTTGGTTTTTTTTGGTCATGGTCAAAAAAGTAACACTTTTCTTACTTTTTTGTTGCTGAACAGTAAGAAAAGTGTTACTCTTATTTTGAAAAGATAAAAAAAGAAGGTGGTGGTCATTTTGGTAAGCAATGATAAAAAGAGAGTGATGTTAACTCTAACAAAAGAAGTTGCTGATGATTTAGAAAAAAATGCAAAAAGTATGGGGTTAAGTAAGTCTTCACTTATTACTTCTTGGATTAACGAAAATAGAAAGGAATCTGAACAAAAAAAATAAGCGATTTCCGCATTTTTTGAGAGAAACGGAAATCGCTATTCTTGCTTTTGTTTTGATAAGGTAATTATAGC

AT-rich region

The information of repeat sequences

Motif CWCKCTAVGCC

Start	P-value		Site
1161	6.73e-08	AGTTGACGGA	CTCGCTAGGCC	AAGACACTTT
532	1.57e-07	CTTAATAGCT	CACGCTACGCC	GACATTCGTC
1054	4.45e-07	CTCTAATTTG	CTCTCTAAGCC	ATTTTAGCTG

Motif TTGVTTTTDTTTKGDHADGRTAAAAAWAG

Start	P-value		Site
1773	2.35e-13	ATCGCTATTC	TTGCTTTTGTTTTGATAAGGTAATTATAG	C
1459	1.82e-12	ACCACAAAAT	TTGGTTTTTTTTGGTCATGGTCAAAAAAG	TAACACTTTT
1532	5.38e-12	AAGAAAAGTG	TTACTCTTATTTTGAAAAGATAAAAAAAG	AAGGTGGTGG
1320	1.67e-11	AACCATGATT	TTGATTTGGTTTGAGTGGGATAAAAATTG	GGAGAAAAAC

Motif TGGSDAGBSGKNGCTCWGHATGAGCG

Start	P-value		Site
288	3.51e-13	AATTATAAAA	TGGGAAGTGGGTGCTCAAAATGAGCG	CCCTTTTTTG
145	5.82e-12	TCTGTCCCAC	TGGCAAGGCGTCCCTCTGAAAGAGCT	CACACTTTAT
13	2.36e-11	TTTAATTTGG	TATGTAGCCGTAGCCCTGCATGAGCG	AGAGCGCTAC
1226	3.76e-11	GCCTGCCTCA	CGGCGAGTGCGGGGTGAGTTTGAGCG	GGGGCTCCCT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000215	100.0	1802	0	0	1	1802	1	1802	0.0	3328
pORI00000454	93.538	325	14	6	961	1281	852	1173	0.0	477
pORI00000265	88.083	386	39	6	901	1281	194	577	0.0	451
pORI00000265	86.331	139	15	4	292	427	13	150	2.82e-36	148
pORI00000274	96.667	150	5	0	461	610	555	406	0.0	250
pORI00000036	96.667	150	5	0	461	610	418	269	0.0	250
pORI00000324	93.413	167	7	3	458	620	524	358	0.0	244
pORI00000232	95.455	154	6	1	461	613	1119	966	0.0	244
pORI00000230	96.0	150	6	0	461	610	880	731	0.0	244
pORI00000203	96.0	150	6	0	461	610	838	689	0.0	244
pORI00000186	96.599	147	5	0	461	607	381	527	0.0	244
pORI00000277	95.364	151	6	1	461	610	545	395	0.0	239
pORI00000206	95.333	150	7	0	461	610	808	659	0.0	239
pORI00000024	95.333	150	7	0	461	610	795	646	0.0	239
pORI00000276	92.353	170	7	5	461	625	1052	884	0.0	237
pORI00000099	94.771	153	7	1	461	612	952	800	0.0	237
pORI00000201	95.89	146	5	1	461	605	672	527	0.0	235
pORI00000148	95.27	148	6	1	461	607	151	298	0.0	233
pORI00000145	92.715	151	10	1	461	610	852	702	0.0	217
pORI00000360	90.728	151	11	3	461	610	751	603	0.0	198
pORI00000325	88.485	165	15	4	461	621	314	150	0.0	196
pORI00000326	90.066	151	14	1	461	610	298	148	0.0	195
pORI00000183	95.082	122	6	0	1139	1260	116	237	0.0	193
pORI00000327	89.655	145	14	1	461	604	1162	1306	0.0	183
pORI00000252	91.87	123	7	3	291	411	210	331	2.17061e-42	169
pORI00000003	94.118	102	4	2	312	411	28	129	6.07e-38	154
pORI00000174	88.889	99	9	2	1213	1310	193	290	6.15e-28	121
pORI00000065	84.091	88	11	3	317	401	39	126	2.9e-16	82