RefSeq NC_012548
DoriC accession number pORI00000265
OriC length 894 nt
OriC AT content 0.594
The location of oriC region 1766..844 nt
Browse in NCBI
OriC map
OriC sequences
TTAGTGAATAAAAAGTGGGTGCTCAATTCGAGCACCTTTTTTTGTTGTCGGCTAGCCGACTTCTGATACAGGAAATTTAGCACAAACACCATCAATTTTAATTGTGGTGTGTAAGTGCGCATTGCTTTAAAAATAGCAATGAAAAAATCAAAAGAAAATGCTAAAGGCGCACTTACACGTCATCAAAGATGACGTTGCGCTAAAACCACTAAAACCTGTATCAGATTTCGCTTCGCTCAAACAAAACTGACTTGCGTCAGTTGAAACATTCAAAGCAGTTAAAGTCCAGTCGTTATCTCCTTCGGACTTTAACTGCTTTGAATGTTGGCTTTAAATGGGTCTAATTTGCTCTCTAAGCCATTTTAGCTGTTAAATGCATAATTAGCTGTCTGTCAACGGTAAATCGACGTAGAACGGCTTTTAGCCGTTCTAGGAGGCTTTAAGGAGTTGACAGACTCACTAGACCAAGACACTTTTGCGCATGCAAAGAAAAGCACACCTGCTTTTTTTGCCTGCCTCACGGCGAGTGCGGGGTGAGTTTGAGCGGGAGCACCCGCTCATTTATGGGGTCAAGCTGACACAGCTTGCAGGTTTGGGCAGCGCCCATGGTTTTATTCGTGTGGGATATAAATTTGAAAATCAGGGGGGCGAGGGAGCAAATTTTGCGACCGTACTACGACCCCCCTTTTAAGTGCCGAGTGCCAATTTTGGTTAAAAATGGTCTTCAAGCCTTTAATATCAATGGTTACAGAGTTTTAAATCTCGGCGAGTTTTCGGCGAGTTTTTAGCGAGTTTTTAGCGAAATAGAGATTTATAGCATATATTATTGACAATAATGTTGCAAAAAAGCATAATAATGGTGTACTTAAATTTGATTTAGTTTGGAGTAAAAAT
TTAGTGAATAAAAAGTGGGTGCTCAATTCGAGCACCTTTTTTTGTTGTCGGCTAGCCGACTTCTGATACAGGAAATTTAGCACAAACACCATCAATTTTAATTGTGGTGTGTAAGTGCGCATTGCTTTAAAAATAGCAATGAAAAAATCAAAAGAAAATGCTAAAGGCGCACTTACACGTCATCAAAGATGACGTTGCGCTAAAACCACTAAAACCTGTATCAGATTTCGCTTCGCTCAAACAAAACTGACTTGCGTCAGTTGAAACATTCAAAGCAGTTAAAGTCCAGTCGTTATCTCCTTCGGACTTTAACTGCTTTGAATGTTGGCTTTAAATGGGTCTAATTTGCTCTCTAAGCCATTTTAGCTGTTAAATGCATAATTAGCTGTCTGTCAACGGTAAATCGACGTAGAACGGCTTTTAGCCGTTCTAGGAGGCTTTAAGGAGTTGACAGACTCACTAGACCAAGACACTTTTGCGCATGCAAAGAAAAGCACACCTGCTTTTTTTGCCTGCCTCACGGCGAGTGCGGGGTGAGTTTGAGCGGGAGCACCCGCTCATTTATGGGGTCAAGCTGACACAGCTTGCAGGTTTGGGCAGCGCCCATGGTTTTATTCGTGTGGGATATAAATTTGAAAATCAGGGGGGCGAGGGAGCAAATTTTGCGACCGTACTACGACCCCCCTTTTAAGTGCCGAGTGCCAATTTTGGTTAAAAATGGTCTTCAAGCCTTTAATATCAATGGTTACAGAGTTTTAAATCTCGGCGAGTTTTCGGCGAGTTTTTAGCGAGTTTTTAGCGAAATAGAGATTTATAGCATATATTATTGACAATAATGTTGCAAAAAAGCATAATAATGGTGTACTTAAATTTGATTTAGTTTGGAGTAAAAAT
AT-rich region
The information of repeat sequences

Motif CGGCGAG

StartP-valueSite
7752.45e-05GGCGAGTTTTCGGCGAGTTTTTAGCGA
7642.45e-05TTTTAAATCTCGGCGAGTTTTCGGCGA
5212.45e-05GCCTGCCTCACGGCGAGTGCGGGGTGA
6465.43e-05AAAATCAGGGGGGCGAGGGAGCAAATT
498.74e-05TTTTTGTTGTCGGCTAGCCGACTTCTG

Motif GGSAGCRCCC

StartP-valueSite
5961.53e-07TGCAGGTTTGGGCAGCGCCCATGGTTTTAT
5467.82e-07GAGTTTGAGCGGGAGCACCCGCTCATTTAT

Motif CDTHGCDCWAAMAMHABYAA

StartP-valueSite
1932.10e-10TCAAAGATGACGTTGCGCTAAAACCACTAAAACCTGTATC
2312.46e-09TCAGATTTCGCTTCGCTCAAACAAAACTGACTTGCGTCAG
768.39e-09ATACAGGAAATTTAGCACAAACACCATCAATTTTAATTGT
1202.12e-08TGTAAGTGCGCATTGCTTTAAAAATAGCAATGAAAAAATC
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000265 100.0 894 0 0 1 894 1 894 0.0 1652
pORI00000454 92.018 451 35 1 255 705 852 1301 0.0 632
pORI00000454 91.935 124 10 0 1 124 1 124 2.24208e-44 174
pORI00000215 88.021 384 43 3 194 577 901 1281 0.0 451
pORI00000183 97.222 144 4 0 434 577 116 259 0.0 244
pORI00000963 78.862 246 42 9 167 407 322 82 2.3e-39 158
pORI00000811 78.862 246 42 9 167 407 322 82 2.3e-39 158
pORI00000174 81.761 159 20 7 434 587 117 271 2.34e-29 124
pORI00000252 89.61 77 6 2 630 705 793 868 5.09e-21 97
pORI00000082 78.205 156 20 12 441 587 851 1001 3.06e-18 88
pORI00000068 89.091 55 5 1 642 696 640 693 3.99e-12 68
pORI00000197 88.0 50 4 2 379 426 65 114 2.4e-09 58