RefSeq NC_006427
DoriC accession number pORI00000003
OriC length 1076 nt
OriC AT content 0.6422
The location of oriC region 2123..963 nt
Browse in NCBI
OriC map
OriC sequences
TGTGTTGAAAGGGCGGATAACTAGATCCGTCCTTTTTTGTTGTCGGCTAGCCGACTTCTGATACATTTTTTTAAGCACAAAAACCACCCAATTTTGGAGTGGTGTGTAAGTGCGCATTGTTCGAAAAATCGAACTATGATTTATTTTTGCTGTTGTATTTATTTTTTATCTTTTTGGTTTTGGTTTTGTTTTTTATAGCTATCGGATTTTATTTGCTTTTTAAGGGCTCTATTTTTCGTTCTACGGCATTTTTATAATTCGCCAATATAATTTATCGCTTTTTTATTAAAACGTCTCAAAATCGTTTCTGAGACGTTTTAGCGTTTATTTCGTTTAGTTGTCGGCATAATCGTTAACACAGGCGTTATCGTAGCGGAAAAGCCCTTGAGCGAAGCGTGGCTTTGCAGTGAAGATGTTGGCTGTTAGATTATGAAAGCCGATAACTGAACGAAATAATAAGCGTAGCGCTCGTATATTTCGGCAGGAGGAGGCTCAAGGGAGTTTGAGGGAATGAAATTCCCTCATGGTTTTAAAATTGCCTGCAATTTTGCCGAGCGGTAGCGCTGGAAAATTTTTGAAAAAAATTTGGAATTTGGAAAAAAAGGGGGGGGAGGAAGCAATTTTGCTTCCGTACTACGACCCCCCCTATAAGTGCCGAGTGCCAACACGGCCAACAAATCCCCCTCAGCCTTAGAACCACAAGGTATACAGCAATCAACAAAAAGTCAACAAACCGCCAACAAATTTGTCAAAAAATATTTATAAGAAACAGTTGTAAATGTATAAAGAAAGTTATATAATGATAGTTAATATATTTAATAGAGGAGGATATTATGGCTAGAGAAAAATCAGATATTGAATATCAAGTTGTAACTGTAAGGTTTCCTAAAGAAATTTATCAAGAGTACAAGAAAATACTAAAAAGTGAAGGTAAAATACCAACTTATGATTTGAGAAATTATATTTTTAGTGTTGTTGAAGAATATGAGAAAGGGCAAAGATGAGTACAAAAAAAGAGCGCCCTCTTCCAAAAGTCGCTCGTAGTGTTACTTGTTTTTGTAAGGTAATTATAGCAA
TGTGTTGAAAGGGCGGATAACTAGATCCGTCCTTTTTTGTTGTCGGCTAGCCGACTTCTGATACATTTTTTTAAGCACAAAAACCACCCAATTTTGGAGTGGTGTGTAAGTGCGCATTGTTCGAAAAATCGAACTATGATTTATTTTTGCTGTTGTATTTATTTTTTATCTTTTTGGTTTTGGTTTTGTTTTTTATAGCTATCGGATTTTATTTGCTTTTTAAGGGCTCTATTTTTCGTTCTACGGCATTTTTATAATTCGCCAATATAATTTATCGCTTTTTTATTAAAACGTCTCAAAATCGTTTCTGAGACGTTTTAGCGTTTATTTCGTTTAGTTGTCGGCATAATCGTTAACACAGGCGTTATCGTAGCGGAAAAGCCCTTGAGCGAAGCGTGGCTTTGCAGTGAAGATGTTGGCTGTTAGATTATGAAAGCCGATAACTGAACGAAATAATAAGCGTAGCGCTCGTATATTTCGGCAGGAGGAGGCTCAAGGGAGTTTGAGGGAATGAAATTCCCTCATGGTTTTAAAATTGCCTGCAATTTTGCCGAGCGGTAGCGCTGGAAAATTTTTGAAAAAAATTTGGAATTTGGAAAAAAAGGGGGGGGAGGAAGCAATTTTGCTTCCGTACTACGACCCCCCCTATAAGTGCCGAGTGCCAACACGGCCAACAAATCCCCCTCAGCCTTAGAACCACAAGGTATACAGCAATCAACAAAAAGTCAACAAACCGCCAACAAATTTGTCAAAAAATATTTATAAGAAACAGTTGTAAATGTATAAAGAAAGTTATATAATGATAGTTAATATATTTAATAGAGGAGGATATTATGGCTAGAGAAAAATCAGATATTGAATATCAAGTTGTAACTGTAAGGTTTCCTAAAGAAATTTATCAAGAGTACAAGAAAATACTAAAAAGTGAAGGTAAAATACCAACTTATGATTTGAGAAATTATATTTTTAGTGTTGTTGAAGAATATGAGAAAGGGCAAAGATGAGTACAAAAAAAGAGCGCCCTCTTCCAAAAGTCGCTCGTAGTGTTACTTGTTTTTGTAAGGTAATTATAGCAA
AT-rich region
The information of repeat sequences

Motif CAACAAMCCCCCM

StartP-valueSite
6341.07e-08TGCTTCCGTACTACGACCCCCCCTATAAGTGCC
6723.06e-08CCAACACGGCCAACAAATCCCCCTCAGCCTTAG
7273.46e-08AACAAAAAGTCAACAAACCGCCAACAAATTTGT
781.61e-07TTTTTAAGCACAAAAACCACCCAATTTTGGAGT

Motif SGTAGCGS

StartP-valueSite
4613.12e-06AAATAATAAGCGTAGCGCTCGTATATTT
5571.18e-05TTTGCCGAGCGGTAGCGCTGGAAAATTT
3691.18e-05CAGGCGTTATCGTAGCGGAAAAGCCCTT

Motif GCCSWSTKCYRAHAS

StartP-valueSite
6542.87e-09CCCTATAAGTGCCGAGTGCCAACACGGCCAACAAA
501.55e-08TTGTCGGCTAGCCGACTTCTGATACATTTTTTTAA
10202.03e-08AAAAAAGAGCGCCCTCTTCCAAAAGTCGCTCGTAG
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000003 100.0 1076 0 0 1 1076 1 1076 0.0 1988
pORI00000252 93.436 777 42 9 31 802 234 1006 0.0 1144
pORI00000252 100.0 34 0 0 287 320 523 490 6.24e-11 64
pORI00000026 94.118 323 15 4 289 610 796 1115 0.0 488
pORI00000249 92.788 208 14 1 303 510 151 357 0.0 300
pORI00000065 82.648 219 30 8 316 531 368 581 0.0 187
pORI00000065 84.746 118 12 6 33 147 39 153 6.11e-26 113
pORI00000215 94.118 102 4 2 28 129 312 411 3.6e-38 154
pORI00000265 83.673 98 14 2 33 129 38 134 2.86e-19 92
pORI00000068 89.041 73 7 1 1 72 1 73 1.03e-18 90
pORI00000454 84.444 90 12 2 31 119 36 124 3.7e-18 88