DoriC

RefSeq

NC_013783

DoriC accession number

pORI00000065

OriC length

795 nt

OriC AT content

0.6453

The location of oriC region

1475..675 nt

Browse in NCBI

OriC map

OriC sequences

TTTATTTATAATTTATGGCGCTCAATTTTGAGTGCTTTTTTTTTGTTGTTGCCAAAGTCAACTTCTGATACCTTTTTTTGAGCAATTACACCACCCAATTTTGGAGTGGTGTGTAAGTGCGCATTGTCGAAAAAATTCGACTCTGATTTTTTTGTGTATTTTGCATTTTCGCTTTGAATATTTTTTGGTTTTTGGAAATTTGTTATGGGCGATTGGATTATTTTAAAAAATCATCAGGTGCTTTGCTTTTTGAATACCCCTAGAAGCTCATATTTTTCGTTTTAAGCGTTTTTTGTGGTCTGGAGGTATAATTTTACCTCGAAAAAACAAAAGTGCTTAAAAATGGGCTTAAAATGGCTTGTGTGATTTTTAGCGTTTATTTCGTTTGGTTATCGGCATAATCGGTTAAACAGATAACACCTGCTCTGCAAGGCCTTTAAGCGTAGCGTGGCTTTGCAGAGCAGGTGTTATCTGTTAGATTATGAAAGCCGATAGCCTAACGAAATAATAAGCGGAAAACCTAATATTTCGGTGGGAGAGGCTCAAGGGAGTTTGAGGGAATGAAATTCCCTCATGGTTTTTGCTTTTAAAATTTTGGGGATTTTCCTAGGGGGGTACTACGACCCCCCCTAGGGTGCATTGTGCATTGATTTTTTTTGAAAACCACTCTAAACCATTAGTGTTATTGGTCTTGGGGCGGTTTTTTTAGAGAAAAAGTAAAATGCTTGTATTTCTGTTGTATGTATAATATAATTGCGGGGTATCAAAAAAATTTGAAGGGAAAAAATATAAAAA

AT-rich region

The information of repeat sequences

Motif ACCMCYC

Start	P-value		Site
623	5.48e-06	GGGTACTACG	ACCCCCC	CTAGGGTGCA
90	5.48e-06	GAGCAATTAC	ACCACCC	AATTTTGGAG
663	2.04e-05	TTTTTTGAAA	ACCACTC	TAAACCATTA

Motif CGAAAAAA

Start	P-value		Site
320	1.14e-05	AATTTTACCT	CGAAAAAA	CAAAAGTGCT
128	1.14e-05	TGCGCATTGT	CGAAAAAA	TTCGACTCTG
765	2.55e-05	TGCGGGGTAT	CAAAAAAA	TTTGAAGGGA
501	4.14e-05	GATAGCCTAA	CGAAATAA	TAAGCGGAAA
780	5.94e-05	AAATTTGAAG	GGAAAAAA	TATAAAAA

Motif AVGCCKADAASCTHA

Start	P-value		Site
486	7.61e-09	TAGATTATGA	AAGCCGATAGCCTAA	CGAAATAATA
256	4.08e-08	CTTTTTGAAT	ACCCCTAGAAGCTCA	TATTTTTCGT
510	5.29e-08	ACGAAATAAT	AAGCGGAAAACCTAA	TATTTCGGTG
431	4.84e-07	CTGCTCTGCA	AGGCCTTTAAGCGTA	GCGTGGCTTT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000065	100.0	795	0	0	1	795	1	795	0.0	1469
pORI00000026	78.198	344	57	16	248	581	702	1037	0.0	204
pORI00000252	83.028	218	31	6	368	581	519	734	0.0	193
pORI00000252	82.803	157	15	11	1	153	201	349	4.45e-31	130
pORI00000003	82.648	219	30	8	368	581	316	531	0.0	187
pORI00000003	84.746	118	12	6	39	153	33	147	4.48e-26	113
pORI00000215	84.091	88	11	3	39	126	317	401	1.26e-16	82