RefSeq NC_013783
DoriC accession number pORI00000065
OriC length 795 nt
OriC AT content 0.6453
The location of oriC region 1475..675 nt
Browse in NCBI
OriC map
OriC sequences
TTTATTTATAATTTATGGCGCTCAATTTTGAGTGCTTTTTTTTTGTTGTTGCCAAAGTCAACTTCTGATACCTTTTTTTGAGCAATTACACCACCCAATTTTGGAGTGGTGTGTAAGTGCGCATTGTCGAAAAAATTCGACTCTGATTTTTTTGTGTATTTTGCATTTTCGCTTTGAATATTTTTTGGTTTTTGGAAATTTGTTATGGGCGATTGGATTATTTTAAAAAATCATCAGGTGCTTTGCTTTTTGAATACCCCTAGAAGCTCATATTTTTCGTTTTAAGCGTTTTTTGTGGTCTGGAGGTATAATTTTACCTCGAAAAAACAAAAGTGCTTAAAAATGGGCTTAAAATGGCTTGTGTGATTTTTAGCGTTTATTTCGTTTGGTTATCGGCATAATCGGTTAAACAGATAACACCTGCTCTGCAAGGCCTTTAAGCGTAGCGTGGCTTTGCAGAGCAGGTGTTATCTGTTAGATTATGAAAGCCGATAGCCTAACGAAATAATAAGCGGAAAACCTAATATTTCGGTGGGAGAGGCTCAAGGGAGTTTGAGGGAATGAAATTCCCTCATGGTTTTTGCTTTTAAAATTTTGGGGATTTTCCTAGGGGGGTACTACGACCCCCCCTAGGGTGCATTGTGCATTGATTTTTTTTGAAAACCACTCTAAACCATTAGTGTTATTGGTCTTGGGGCGGTTTTTTTAGAGAAAAAGTAAAATGCTTGTATTTCTGTTGTATGTATAATATAATTGCGGGGTATCAAAAAAATTTGAAGGGAAAAAATATAAAAA
TTTATTTATAATTTATGGCGCTCAATTTTGAGTGCTTTTTTTTTGTTGTTGCCAAAGTCAACTTCTGATACCTTTTTTTGAGCAATTACACCACCCAATTTTGGAGTGGTGTGTAAGTGCGCATTGTCGAAAAAATTCGACTCTGATTTTTTTGTGTATTTTGCATTTTCGCTTTGAATATTTTTTGGTTTTTGGAAATTTGTTATGGGCGATTGGATTATTTTAAAAAATCATCAGGTGCTTTGCTTTTTGAATACCCCTAGAAGCTCATATTTTTCGTTTTAAGCGTTTTTTGTGGTCTGGAGGTATAATTTTACCTCGAAAAAACAAAAGTGCTTAAAAATGGGCTTAAAATGGCTTGTGTGATTTTTAGCGTTTATTTCGTTTGGTTATCGGCATAATCGGTTAAACAGATAACACCTGCTCTGCAAGGCCTTTAAGCGTAGCGTGGCTTTGCAGAGCAGGTGTTATCTGTTAGATTATGAAAGCCGATAGCCTAACGAAATAATAAGCGGAAAACCTAATATTTCGGTGGGAGAGGCTCAAGGGAGTTTGAGGGAATGAAATTCCCTCATGGTTTTTGCTTTTAAAATTTTGGGGATTTTCCTAGGGGGGTACTACGACCCCCCCTAGGGTGCATTGTGCATTGATTTTTTTTGAAAACCACTCTAAACCATTAGTGTTATTGGTCTTGGGGCGGTTTTTTTAGAGAAAAAGTAAAATGCTTGTATTTCTGTTGTATGTATAATATAATTGCGGGGTATCAAAAAAATTTGAAGGGAAAAAATATAAAAA

AT-rich region
The information of repeat sequences

Motif ACCMCYC

StartP-valueSite
6235.48e-06GGGTACTACGACCCCCCCTAGGGTGCA
905.48e-06GAGCAATTACACCACCCAATTTTGGAG
6632.04e-05TTTTTTGAAAACCACTCTAAACCATTA

Motif CGAAAAAA

StartP-valueSite
3201.14e-05AATTTTACCTCGAAAAAACAAAAGTGCT
1281.14e-05TGCGCATTGTCGAAAAAATTCGACTCTG
7652.55e-05TGCGGGGTATCAAAAAAATTTGAAGGGA
5014.14e-05GATAGCCTAACGAAATAATAAGCGGAAA
7805.94e-05AAATTTGAAGGGAAAAAATATAAAAA

Motif AVGCCKADAASCTHA

StartP-valueSite
4867.61e-09TAGATTATGAAAGCCGATAGCCTAACGAAATAATA
2564.08e-08CTTTTTGAATACCCCTAGAAGCTCATATTTTTCGT
5105.29e-08ACGAAATAATAAGCGGAAAACCTAATATTTCGGTG
4314.84e-07CTGCTCTGCAAGGCCTTTAAGCGTAGCGTGGCTTT

The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000065 100.0 795 0 0 1 795 1 795 0.0 1469
pORI00000026 78.198 344 57 16 248 581 702 1037 0.0 204
pORI00000252 83.028 218 31 6 368 581 519 734 0.0 193
pORI00000252 82.803 157 15 11 1 153 201 349 4.45e-31 130
pORI00000003 82.648 219 30 8 368 581 316 531 0.0 187
pORI00000003 84.746 118 12 6 39 153 33 147 4.48e-26 113
pORI00000215 84.091 88 11 3 39 126 317 401 1.26e-16 82