DoriC

RefSeq

NC_015173

DoriC accession number

pORI00000327

OriC length

1306 nt

OriC AT content

0.6753

The location of oriC region

30507..31812 nt

Browse in NCBI

OriC map

OriC sequences

AAGGTGGGATAACTATGTATGACAGAAAAATCTTCAACTGGCCAATATTTTTTATTGTGATTTTGAGTTATGTATTTATGTTATCGTTGTTTTTGTGGGTTTCTAATATAAGTCATTTAAAAGTCTTTTTATTGACTATTCCTTTTCTTTTAATGACTTGTGTTTATATAGTACTGTTTATAAAAAATAGATAGTCAGTGTTTTACACGTGTTTATGTATTTCATAAACACGTGTATTTGTGTATTTTTGAAACTCGTTTTCAACTCGTTTCAAAAACCAAAATAGCGTGCCGAATTCGGCACGCTATTTAATTTATTCAAAACACTCACTATATACTTGACCAACACTAAAGAATCCAATTGCTGCAGACAATGCTTGAGGTCCCGCAGCACTTCCAGCTGTTTTGACAGCAGAAACAGCTGCGTCTTTCTTAGACATCGTCTTACGAGCTTCTTTATATGCTGGAACTAACTTAGTAGCGAATGTTTTTGCACCACCAGCAGCTTTAAGAACTTCTTTTACTTTAGCAATTTTAGCAGCAGAAAATGCATTACTAACGATTGCTAAACCTATAGCTGATGTGCACCCTACAACTCCACGCTCAGAAGTAGTTAAATTAGAATTTTCTTTTTGTAAGTATTCATTTGTAGCCTTATCCCCTTTTGCTAATACTGAATCTGGAATGTTTTCTACCGTAGTAAGAAACTGCGTCAATTCTTGTTGATCAACATTTTCTAAACTTATGCCATCGGGAATGTCTGAACCACTTTCTTGCGAACTATGAGTCACTTGTTTAACATTACTAACCTCATTCGCTTCTACGTATGAAGTACTTCCAAAACCAAATAGTAAAGCAACGCTTGATAATGTTACAATAGCCTTTTTCAAAAGAAAATCTCCTTTCAAATAATAAATTTAAATGTTATATTTTTTTAGTATAACATAATAAAATACCTTTTATGGAGGTGTCAGAATGAAAAAAAATTCTGTTTTAGCGGGAATAATAATACTACTACTTATGATTTGCAGTATAGTATTGAACTTAATCAATATTCCTAGTGAAGCTAATATCATATACTCAATAACAGCCATTATAATTATTATTTTATTGTTCTTCATTATTCCAAAAAACAACAAATCATAGTATTGCTTTATTCCAATTGCTTTATTGACAACGAGCCTCTGAACCCTTAACAAACCCTAAACTTGTCGAATCGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTTCAAGTTTAGTTAAGGGTTCTTCTCATTGTTCAATAAATTTTCTCGGCATAA

AT-rich region

The information of repeat sequences

Motif GCAGCASAAAMWGC

Start	P-value		Site
537	1.16e-08	AGCAATTTTA	GCAGCAGAAAATGC	ATTACTAACG
408	2.60e-08	AGCTGTTTTG	ACAGCAGAAACAGC	TGCGTCTTTC
492	9.08e-08	GAATGTTTTT	GCACCACCAGCAGC	TTTAAGAACT
387	1.44e-07	TTGAGGTCCC	GCAGCACTTCCAGC	TGTTTTGACA
363	1.44e-07	GAATCCAATT	GCTGCAGACAATGC	TTGAGGTCCC

Motif CGGGAA

Start	P-value		Site
997	5.19e-05	TCTGTTTTAG	CGGGAA	TAATAATACT
751	5.19e-05	CTTATGCCAT	CGGGAA	TGTCTGAACC

Motif SCYTAMWWSBBCACGCT

Start	P-value		Site
290	1.15e-10	AAAATAGCGT	GCCGAATTCGGCACGCT	ATTTAATTTA
587	4.92e-09	CTGATGTGCA	CCCTACAACTCCACGCT	CAGAAGTAGT
1222	6.04e-09	CGAATCGTCG	GCTTAATAGCTCACGCT	ATGCCGACAT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000327	100.0	1306	0	0	1	1306	1	1306	0.0	2412
pORI00000327	100.0	30	0	0	281	310	310	281	1.27e-08	57
pORI00000325	98.225	169	1	2	1138	1306	336	170	0.0	294
pORI00000326	97.024	168	5	0	1139	1306	321	154	0.0	283
pORI00000323	98.71	155	2	0	1152	1306	109	263	0.0	276
pORI00000277	93.082	159	11	0	1148	1306	559	401	0.0	233
pORI00000232	93.082	159	11	0	1148	1306	1133	975	0.0	233
pORI00000201	93.082	159	11	0	1148	1306	686	528	0.0	233
pORI00000024	93.125	160	10	1	1147	1306	810	652	0.0	233
pORI00000206	93.082	159	10	1	1148	1306	822	665	0.0	231
pORI00000099	92.5	160	12	0	1147	1306	967	808	0.0	230
pORI00000276	92.5	160	11	1	1148	1306	1066	907	0.0	228
pORI00000230	92.453	159	11	1	1148	1306	894	737	0.0	226
pORI00000203	92.453	159	11	1	1148	1306	852	695	0.0	226
pORI00000036	92.903	155	10	1	1152	1306	428	275	0.0	224
pORI00000148	92.308	156	12	0	1151	1306	140	295	0.0	222
pORI00000274	91.824	159	12	1	1148	1306	569	412	0.0	220
pORI00000186	92.258	155	11	1	1152	1306	371	524	0.0	219
pORI00000145	91.25	160	14	0	1147	1306	867	708	0.0	219
pORI00000324	89.506	162	16	1	1146	1306	537	376	0.0	204
pORI00000215	89.655	145	14	1	1162	1306	461	604	0.0	183
pORI00000279	100.0	30	0	0	250	279	216	245	1.27e-08	57
pORI00000005	100.0	30	0	0	250	279	170	199	1.27e-08	57