RefSeq NC_011652
DoriC accession number pORI00000252
OriC length 1035 nt
OriC AT content 0.6483
The location of oriC region 1656..720 nt
Browse in NCBI
OriC map
OriC sequences
AAAAATATTTTTGCGGATTATTGGGGTTATTTCTCTTTTTGTTGCATTGTTGTTGGGAGTTTTTGCAAAAGAGCCATTTATTAATTTTGTTGCAAGCAATAATAATCTAGTATTGTCTGGTTCGTTTTCATTTTTGTTTTTGGCAGTGGGGATTATTTCTATAGGCTATTCTGTTTTTGCAAAAAGTAAATAAAATGTTTTTTGATTTAGAAGTTAGGCGCTCAATTTGAGCGCCTTTTTTGTTGTCGGCTAGCCGACTTCTGATACATTTTTTAAGCACAAAAACCACCCAATTTTGGAGTGGTGTGTAAGTGCGCATTGTTCGAAAAATCGAACTCTGATTTATTTTTGCTGTTGTATTTATTTTTTTATCTTTTGGGTTTTGGTTTTGTTTTTTATTGCTATCGGATTTTATTTGCTTTTTAAGGGCTCTATTTTTCGTTCTACGGCATTTTTATAATTCGCCAATATAATTTATCGCTTTTTTATTAAAACGTCTCAGAAACGATTTTGAGACGTTTTAGCGTTTATTTCGTTTAGTTGTCGGCATAATCGTTAAAACAGGCGTTATCGTAGCGGAAAAGCCCTTGAGCGTAGCGTGGCTTTGCAGTGAAGATGTTGGCTGTTAGATTATGAAAGCCGATAACTGAACGAAATAATAAGCGTAGCGCCCGTATATTTCGGCAGGAGGAGGCTCAAGGGAGTTTGAGGGAATGAAATTCCCTCATGGTTTTAAAATTGCTTGCAATTTTGCCGAGCGTTAGCGCTGGAAAATTTTTGAAAAAAATTTGGAATTTGGAAAAAAAGGGGGGCAAGGAAGCAATTTTGCTTCCGTACTACGACCCCCCTTTTAAGTGCCGAGTGCCAAATCGGTCAACAATCCCTAACAAACCCATACACACCAAGTGTTACAGCAATCAACAAAAAGTCAACAAACCGCCAACAAAATTCTGGAAATATAATGATAAGAAGGTAGTTGAATATATATAGATAAAGTTGTATAATGTTTTTATAAATATAAAAGGAGTGCTAAAA
AAAAATATTTTTGCGGATTATTGGGGTTATTTCTCTTTTTGTTGCATTGTTGTTGGGAGTTTTTGCAAAAGAGCCATTTATTAATTTTGTTGCAAGCAATAATAATCTAGTATTGTCTGGTTCGTTTTCATTTTTGTTTTTGGCAGTGGGGATTATTTCTATAGGCTATTCTGTTTTTGCAAAAAGTAAATAAAATGTTTTTTGATTTAGAAGTTAGGCGCTCAATTTGAGCGCCTTTTTTGTTGTCGGCTAGCCGACTTCTGATACATTTTTTAAGCACAAAAACCACCCAATTTTGGAGTGGTGTGTAAGTGCGCATTGTTCGAAAAATCGAACTCTGATTTATTTTTGCTGTTGTATTTATTTTTTTATCTTTTGGGTTTTGGTTTTGTTTTTTATTGCTATCGGATTTTATTTGCTTTTTAAGGGCTCTATTTTTCGTTCTACGGCATTTTTATAATTCGCCAATATAATTTATCGCTTTTTTATTAAAACGTCTCAGAAACGATTTTGAGACGTTTTAGCGTTTATTTCGTTTAGTTGTCGGCATAATCGTTAAAACAGGCGTTATCGTAGCGGAAAAGCCCTTGAGCGTAGCGTGGCTTTGCAGTGAAGATGTTGGCTGTTAGATTATGAAAGCCGATAACTGAACGAAATAATAAGCGTAGCGCCCGTATATTTCGGCAGGAGGAGGCTCAAGGGAGTTTGAGGGAATGAAATTCCCTCATGGTTTTAAAATTGCTTGCAATTTTGCCGAGCGTTAGCGCTGGAAAATTTTTGAAAAAAATTTGGAATTTGGAAAAAAAGGGGGGCAAGGAAGCAATTTTGCTTCCGTACTACGACCCCCCTTTTAAGTGCCGAGTGCCAAATCGGTCAACAATCCCTAACAAACCCATACACACCAAGTGTTACAGCAATCAACAAAAAGTCAACAAACCGCCAACAAAATTCTGGAAATATAATGATAAGAAGGTAGTTGAATATATATAGATAAAGTTGTATAATGTTTTTATAAATATAAAAGGAGTGCTAAAA
AT-rich region
The information of repeat sequences

Motif CAACAAHCCCCC

StartP-valueSite
8372.53e-08TGCTTCCGTACTACGACCCCCCTTTTAAGTGC
9304.61e-08AACAAAAAGTCAACAAACCGCCAACAAAATTC
2801.42e-07TTTTTAAGCACAAAAACCACCCAATTTTGGAG
8757.22e-07CCAAATCGGTCAACAATCCCTAACAAACCCAT

Motif GCSKAGCG

StartP-valueSite
7533.87e-06TTGCAATTTTGCCGAGCGTTAGCGCTGG
6631.07e-05GAAATAATAAGCGTAGCGCCCGTATATT
5921.07e-05AAGCCCTTGAGCGTAGCGTGGCTTTGCA
5712.94e-05ACAGGCGTTATCGTAGCGGAAAAGCCCT
8573.91e-05CCTTTTAAGTGCCGAGTGCCAAATCGGT

Motif TTGTTGTYGGC

StartP-valueSite
2402.43e-07AGCGCCTTTTTTGTTGTCGGCTAGCCGACTT
5384.34e-07TTATTTCGTTTAGTTGTCGGCATAATCGTTA
473.44e-06TTTTGTTGCATTGTTGTTGGGAGTTTTTGCA
1344.84e-06GTTTTCATTTTTGTTTTTGGCAGTGGGGATT
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000252 100.0 1035 0 0 1 1035 1 1035 0.0 1912
pORI00000003 93.436 777 42 9 234 1006 31 802 0.0 1144
pORI00000003 100.0 34 0 0 490 523 320 287 6e-11 64
pORI00000026 96.599 294 9 1 519 812 823 1115 0.0 486
pORI00000249 94.634 205 11 0 509 713 153 357 0.0 318
pORI00000065 83.028 218 31 6 519 734 368 581 0.0 193
pORI00000065 82.803 157 15 11 201 349 1 153 5.83e-31 130
pORI00000215 91.87 123 7 3 210 331 291 411 1.24015e-42 169
pORI00000265 83.051 118 16 4 217 331 18 134 3.53e-23 104
pORI00000265 89.61 77 6 2 793 868 630 705 5.91e-21 97
pORI00000454 89.024 82 6 3 793 872 1226 1306 1.64e-21 99
pORI00000454 83.333 108 14 4 217 321 18 124 5.91e-21 97