DoriC

RefSeq

NC_007771

DoriC accession number

pORI00000203

OriC length

852 nt

OriC AT content

0.669

The location of oriC region

1096..1947 nt

Browse in NCBI

OriC map

OriC sequences

CTTAAAAGCTAGCGTTTTTTTATGTATTTTTGCCCCTGCGGGAACTATAGCGTTCAACCGGCATGGTTGACCACTTTTCATGCCAACTTTTAAGTTTGCATGTAAATGGGCAGTGTCTTAAAAAATCAACACTGGATTTGCTCGAATTTTAGTTTGTGAAATTAAGATATATTTATTTGGCTCATATTTGCGTTTTAAGAGGGTATATAAGTTTTTTGGTATAAAACTATATGATTTACCCCTAATTCTTTAAAATGCCCCCTTAAAATTCAAAATAAAGGCATAAAAAATAAAAGCTACCCCAAAATTGAGATAGCTTTTTTCTTTCGTACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGGAATTCAAAAAAGTTATGGGCTATAAATCTACATCACTTTTTCAAGAATGTAGTAGCAATATTCAAGACAAATTAATTTTTATAACTGCTCGGAATATCTCAAGCCGTTTCTTTAATTTTGAAATAAAAAAATCGACGAAGGTCGATTATGGTTTTTACACGCGTTCTTTTAGAACGCATAAGTGCGCCCTTACGGGAATTAACTAGATTATAACGATGAAAAATAGATCTGTAAAGCGATAACTATTGTGATAAAGTTTGCTAAAAAAAGGAGTGTTTTATTTTTATAATTATCAAGACGATAATAAAAAATAGAACACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAGCAA

AT-rich region

The information of repeat sequences

Motif TRCCCC

Start	P-value		Site
256	3.38e-05	TTCTTTAAAA	TGCCCC	CTTAAAATTC
31	3.38e-05	TATGTATTTT	TGCCCC	TGCGGGAACT
298	9.82e-05	AAATAAAAGC	TACCCC	AAAATTGAGA
237	9.82e-05	CTATATGATT	TACCCC	TAATTCTTTA
554	1.37e-04	AACGCATAAG	TGCGCC	CTTACGGGAA

Motif TYCAAGCCGYATCGTYRAT

Start	P-value		Site
351	1.40e-10	TATTTTTCTT	TCGACGCCGTATCGTCGAT	GGAATTCAAA
813	7.07e-09	TGTTAAGGGT	TCCGAGGCTCAACGTCAAT	AAAGCAATTG
53	8.35e-09	AACTATAGCG	TTCAACCGGCATGGTTGAC	CACTTTTCAT
469	1.76e-08	CTCGGAATAT	CTCAAGCCGTTTCTTTAAT	TTTGAAATAA

Motif GACGAAKGTCG

Start	P-value		Site
505	5.08e-08	TAAAAAAATC	GACGAAGGTCG	ATTATGGTTT
747	1.47e-07	TAAACTTGCA	GACGAATGTCG	GCATAGCGTG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000203	100.0	852	0	0	1	852	1	852	0.0	1574
pORI00000099	95.223	649	27	3	1	649	1	645	0.0	1024
pORI00000099	98.182	165	2	1	689	852	802	966	0.0	287
pORI00000232	94.135	665	33	5	1	664	1	660	0.0	1007
pORI00000232	98.788	165	1	1	689	852	969	1133	0.0	292
pORI00000206	93.471	291	19	0	1	291	1	291	0.0	433
pORI00000206	98.857	175	1	1	678	852	649	822	0.0	311
pORI00000024	93.471	291	19	0	1	291	1	291	0.0	433
pORI00000024	98.857	175	1	1	678	852	636	809	0.0	311
pORI00000230	91.065	291	26	0	1	291	1	291	0.0	394
pORI00000230	98.324	179	3	0	674	852	716	894	0.0	315
pORI00000230	93.038	158	7	3	497	652	484	639	0.0	228
pORI00000145	90.136	294	24	5	1	291	1	292	0.0	377
pORI00000145	96.667	180	5	1	674	852	687	866	0.0	298
pORI00000145	95.597	159	4	2	495	652	454	610	0.0	252
pORI00000274	88.673	309	26	9	1	304	1	305	0.0	368
pORI00000274	96.774	186	4	2	667	852	386	569	0.0	309
pORI00000036	99.398	166	1	0	683	848	263	428	0.0	302
pORI00000148	97.175	177	4	1	674	849	316	140	0.0	298
pORI00000201	95.676	185	6	2	669	852	503	686	0.0	296
pORI00000201	86.842	114	13	2	172	284	304	416	6.18e-30	126
pORI00000277	98.795	166	1	1	688	852	394	559	0.0	294
pORI00000276	98.204	167	1	2	688	852	900	1066	0.0	291
pORI00000186	98.773	163	2	0	686	848	533	371	0.0	291
pORI00000324	97.368	152	3	1	689	839	370	521	0.0	257
pORI00000360	94.578	166	6	3	687	851	601	764	0.0	254
pORI00000215	96.599	147	5	0	692	838	607	461	0.0	244
pORI00000326	93.333	165	10	1	689	852	148	312	0.0	243
pORI00000325	92.442	172	10	2	681	851	158	327	0.0	243
pORI00000323	90.857	175	12	3	675	848	280	109	0.0	231
pORI00000327	92.453	159	11	1	695	852	1306	1148	0.0	226
pORI00000267	100.0	38	0	0	674	711	219	182	2.94e-13	71
pORI00000121	100.0	38	0	0	674	711	486	449	2.94e-13	71
pORI00000120	100.0	38	0	0	674	711	486	449	2.94e-13	71
pORI00000070	100.0	38	0	0	674	711	486	449	2.94e-13	71
pORI00000266	100.0	35	0	0	677	711	482	448	1.37e-11	66
pORI00000190	91.489	47	4	0	665	711	776	822	1.37e-11	66
pORI00000189	100.0	35	0	0	677	711	482	448	1.37e-11	66