DoriC

RefSeq

NC_012549

DoriC accession number

pORI00000183

OriC length

698 nt

OriC AT content

0.606

The location of oriC region

1141..1838 nt

Browse in NCBI

OriC map

OriC sequences

ATTTGTCCTATGGCTTTAAATTACCCGCTGATGAGCATTGAAGCTGGTTAATGGCCGTCAGTCAACGGTAAATCGAATTAAAGGGACTTACTGCTTTAGCAGTTAGTCCCTTTTTGAGGCTTTAAGGAGTTGACTGACTCACTAGACCAAGACACTTTTGCGCATGCAAAGAAAAGCACACCTGCTTTTTTTGCCTGCCTCACGGCGAGTGCGGGGTGAGTTTGAGCGGGAGCTCCCGCTCATTTCTGGGGTCCAGCTGGTTCAGCTGGTCAGTATGGCTGAAAGCCATGGTCTTAAAAAGCAGTTCGGCGATTTTTGCTGATCTGCTTTTTGGGGGTTGAAACCGTCGTTTTTTCGACGGTTTCTTCTTATCTTGATACTAGTATGATCAACTAGTTTTTTATTTTTGCGAGTAATTTGTCCCTTATCATTGATTTTATGGGGTTTTGGTGTATTATTGGACATATAAAATTTAATAATAAAGAAGCGCAAAAAAAAACCCACGTGCAAGTTCCTGATTTGGCCGTCCGGAACACGTGAGTTTGATTTCAAAGTTTTATTGCTTCAAAGCCTAGTATAACAGATGCTATAGGACTTTTGAATAATTAGGTATATAATTTTTATGGTTGTCAAAATTATATAAGCAAAAACAGAAATCAAACTCCTTTTCACGTAGGTTAGAAAAGGAGCTTTTATAT

AT-rich region

The information of repeat sequences

Motif GCAAARAAAARCMCACSTGC

Start	P-value		Site
166	1.12e-12	TTTTGCGCAT	GCAAAGAAAAGCACACCTGC	TTTTTTTGCC
489	1.90e-12	ATAAAGAAGC	GCAAAAAAAAACCCACGTGC	AAGTTCCTGA

Motif GGCCGTCMG

Start	P-value		Site
522	7.39e-07	TTCCTGATTT	GGCCGTCCG	GAACACGTGA
53	1.88e-06	GCTGGTTAAT	GGCCGTCAG	TCAACGGTAA

Motif CCCGCT

Start	P-value		Site
235	6.85e-05	AGCGGGAGCT	CCCGCT	CATTTCTGGG
24	6.85e-05	CTTTAAATTA	CCCGCT	GATGAGCATT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000183	100.0	698	0	0	1	698	1	698	0.0	1290
pORI00000197	95.546	449	16	4	252	698	240	686	0.0	715
pORI00000174	97.283	368	4	6	334	698	299	663	0.0	619
pORI00000174	86.081	273	28	8	1	267	1	269	0.0	285
pORI00000265	97.222	144	4	0	116	259	434	577	0.0	244
pORI00000454	96.528	144	4	1	116	259	1031	1173	0.0	237
pORI00000215	95.082	122	6	0	116	237	1139	1260	0.0	193
pORI00000963	98.795	83	1	0	57	139	101	19	1.08e-36	148
pORI00000811	98.795	83	1	0	57	139	101	19	1.08e-36	148
pORI00000751	98.795	83	1	0	57	139	556	638	1.08e-36	148