DoriC

RefSeq

NC_011798

DoriC accession number

pORI00000454

OriC length

1736 nt

OriC AT content

0.6054

The location of oriC region

1070..409 nt

Browse in NCBI

OriC map

OriC sequences

TTAATGAATGGAAAATGGGTGCTCGATTTGAGCACCCATTTTTGTTGTCGGCTAGCCGACTTCTGATACAGGGAATTTAGCACAAACACCAGCAATTTTAATTGTGGTGTGTAAGTGCGCATTGACCTCGTTTTACTCGGTCTGCTGATTCTCTTAACTTTATTTCACTAGTTTCTTTCTCTCGGCGTTCAATAGACTGCATAGTTCCTTAACTTCAGGCCTTTCACAATCATAGAAAGTATAGCTAATGGCTTCTTTTGAGGAATTAATATTCATCACAGACTCGTCAGCTTCATCCAGTTCATCTAGTAACTTATGCATCAGAACATTAATATCCTTATTGCTAAAATGATACCCATACGTTTCCCAGTCACGGGCTAATTGCATTTTGTTTGACGAAAAATATCTAGTATGGTCATCTATAAGGTCAGTTCCACTATTGACAAAAGCAAATATGTCACGGGAAATCACCGCTAATCCGCTATCGGCAGAATGAACATCATCTTTCAAGATTGAAATTGCATCTAGAATATCTGACTCGGAATTGGCAACCTTACGTGATCGCCGATTAAGGTAATATGTCATTGCCGGAACAATCAAACAACTAGCTACTAAACTAGCTACTAAAGGAATTAATACACTTAACATAAAATCTACTCCTTCAAATTTTTTCAACTTTAAGCCCTACGTTAATAATATAAGCAATTGCTACTGAATCTATTCAGCATCTATTTAAAGACTAAATATGCTTCTCTAAGCCCCTTATAAGTTCACGATATACTCTTCTAAACATTTCTATTGGAATCACTAGATAGAAAATAAGAGCCATATGTGGTCTCTTCCTTGCCGAACGTCAGTTGGAATCTTCAAAGCCAATAAAGTCCAGTCGCCAACTCCTTCAGACTTTATTGGCTTTGAAGATTGCTTTTAAATGCCTCTAATTTGCTCTATAAGCCATTTTGGCTGCTACCCGTATAATTTACTGTCCGTCAACGGTAAATCGACGTAGAACGGCTTTTAGCCGTTCTAGGAGGCTTTAAGGAGTTGACAGACTCACTAGGCCAAGACACTTTTGCGCATGCAAAAAAAGCACACCTGCTTTTTTTGCCTGCCTCACGGCGAGTGCGGGGTGAGTTTGAGCGGGAGCTCCCGCTCATTTATGGGGTCAAGCTGACACAGCTTGCAGGTTTGGGCAGCGCCCATGGTTTTATTCGTGCGGGATAGAAATTTGGAAATCAGGGGGGCGAGGGAGCGAATTTTGCGACCGTACTACGACCCCCCTTTTAAGTGCCGAGTGCCAAAATCGAATTTTTCAGGGGCTTAAGCTTACTCTCCCAAGGGATTTAGTCACTTTGTGTTTGAGCGACATTTGAGCGACATTTTGGGCGAAAATGGCTAAAATTGTAATGCTTTACTACATCTATGAAATGCTTTACTATATCTATGTAATGCTTTATAATGTATGCATGAAGCTATTTAAGTTAGGAGTGATTAAGTTATGACTGCTGAAAAAAAAGAAATGCAAAGTGTCACTATCCGTATTCCTAAAGATTTGTATGCCGAATATAAAAAAGCATTATTGGCTCAGGGAAAAATTGTTACTTATGACGTGCGAAATTACATGGCTGAAGTTGTCAAAAATCAAGCGAAAGGGCAGAAATGAGCATAAAAAAAGAGCGCACCCGCTGAAAAGTTCGCTCGTTAATTGCTCGTTCTGATAAGGTAATTTTAACATT

AT-rich region

The information of repeat sequences

Motif TTTGAGCGAVA

Start	P-value		Site
1369	2.27e-07	TTGAGCGACA	TTTGAGCGACA	TTTTGGGCGA
1358	2.27e-07	TCACTTTGTG	TTTGAGCGACA	TTTGAGCGAC
1135	1.47e-06	GCGGGGTGAG	TTTGAGCGGGA	GCTCCCGCTC
1381	1.91e-06	TGAGCGACAT	TTTGGGCGAAA	ATGGCTAAAA

Motif GGCGAGKGMGSG

Start	P-value		Site
1243	3.99e-08	AAATCAGGGG	GGCGAGGGAGCG	AATTTTGCGA
1118	3.99e-08	CCTGCCTCAC	GGCGAGTGCGGG	GTGAGTTTGA

Motif AAAGVMANTAWTDCRCDTRAAAWAAVAGCDMAYCCGCT

Start	P-value		Site
1650	5.82e-17	AATCAAGCGA	AAGGGCAGAAATGAGCATAAAAAAAGAGCGCACCCGCT	GAAAAGTTCG
1063	1.19e-15	CTCACTAGGC	CAAGACACTTTTGCGCATGCAAAAAAAGCACACCTGCT	TTTTTTGCCT
446	6.12e-15	ACTATTGACA	AAAGCAAATATGTCACGGGAAATCACCGCTAATCCGCT	ATCGGCAGAA
626	1.18e-13	ACTAGCTACT	AAAGGAATTAATACACTTAACATAAAATCTACTCCTTC	AAATTTTTTC

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000454	100.0	1736	0	0	1	1736	1	1736	0.0	3206
pORI00000265	92.018	451	35	1	852	1301	255	705	0.0	632
pORI00000265	91.935	124	10	0	1	124	1	124	4.48416e-44	174
pORI00000215	93.498	323	18	3	852	1173	961	1281	0.0	477
pORI00000183	96.528	144	4	1	1031	1173	116	259	0.0	237
pORI00000174	95.0	80	3	1	1104	1183	193	271	4.58e-29	124
pORI00000252	89.024	82	6	3	1226	1306	793	872	2.78e-21	99
pORI00000252	83.333	108	14	4	18	124	217	321	9.98e-21	97
pORI00000003	84.444	90	12	2	36	124	31	119	6.01e-18	88
pORI00000068	90.909	55	4	1	1238	1292	640	693	1.68e-13	73