RefSeq NC_010694.1
Accession number NC_010694.1
DoriC accession number ORI92520062
OriC length 464 nt
OriC AT content 0.5625
The location of oriC region 3883004..3883467 nt
Browse in NCBI
OriC map
OriC sequences
gidAGGTACTGCACCTCGCGGCTTGTGCGAATTAAGGGATGTTGCTGAGGGCGTGGATTCTACTCAACTTTAGACGATGGGGAAAGCACCGGGATCTTCGTGTATTAAAAAGAAGATCTTTTTTATTTAGAGATCTCTTTATTAGATCTTCTATTAGGATCGACGATCTCTGTGGATAAGCCCTTTTTCTCAATCATGATCAGATCGTTAGTGACGATCACTAACTGTGAACGATCGGTGATCCTGTACCGTATAAGCTGGGATCAAAATGGCATGTTATGCACAGGCTCAGTCCAGGTACCAAGTTGTTCTTGGGATAACAACCGGTTTTCACCCGGTAGTTAGCCATGTTATCCACAGATAATGGGATAAAAAACCTGCAAAAAAGAGCGAAATTTACAAAACTCATCGCTGTAAAAGGGGATTTAGCGGATCGGAAAGACGATCGCAGACCGATCCTCACCCTGTmioC
gidAGGTACTGCACCTCGCGGCTTGTGCGAATTAAGGGATGTTGCTGAGGGCGTGGATTCTACTCAACTTTAGACGATGGGGAAAGCACCGGGATCTTCGTGTATTAAAAAGAAGATCTTTTTTATTTAGAGATCTCTTTATTAGATCTTCTATTAGGATCGACGATCTCTGTGGATAAGCCCTTTTTCTCAATCATGATCAGATCGTTAGTGACGATCACTAACTGTGAACGATCGGTGATCCTGTACCGTATAAGCTGGGATCAAAATGGCATGTTATGCACAGGCTCAGTCCAGGTACCAAGTTGTTCTTGGGATAACAACCGGTTTTCACCCGGTAGTTAGCCATGTTATCCACAGATAATGGGATAAAAAACCTGCAAAAAAGAGCGAAATTTACAAAACTCATCGCTGTAAAAGGGGATTTAGCGGATCGGAAAGACGATCGCAGACCGATCCTCACCCTGTmioC
gidAGGTACTGCACCTCGCGGCTTGTGCGAATTAAGGGATGTTGCTGAGGGCGTGGATTCTACTCAACTTTAGACGATGGGGAAAGCACCGGGATCTTCGTGTATTAAAAAGAAGATCTTTTTTATTTAGAGATCTCTTTATTAGATCTTCTATTAGGATCGACGATCTCTGTGGATAAGCCCTTTTTCTCAATCATGATCAGATCGTTAGTGACGATCACTAACTGTGAACGATCGGTGATCCTGTACCGTATAAGCTGGGATCAAAATGGCATGTTATGCACAGGCTCAGTCCAGGTACCAAGTTGTTCTTGGGATAACAACCGGTTTTCACCCGGTAGTTAGCCATGTTATCCACAGATAATGGGATAAAAAACCTGCAAAAAAGAGCGAAATTTACAAAACTCATCGCTGTAAAAGGGGATTTAGCGGATCGGAAAGACGATCGCAGACCGATCCTCACCCTGTmioC
gidAGGTACTGCACCTCGCGGCTTGTGCGAATTAAGGGATGTTGCTGAGGGCGTGGATTCTACTCAACTTTAGACGATGGGGAAAGCACCGGGATCTTCGTGTATTAAAAAGAAGATCTTTTTTATTTAGAGATCTCTTTATTAGATCTTCTATTAGGATCGACGATCTCTGTGGATAAGCCCTTTTTCTCAATCATGATCAGATCGTTAGTGACGATCACTAACTGTGAACGATCGGTGATCCTGTACCGTATAAGCTGGGATCAAAATGGCATGTTATGCACAGGCTCAGTCCAGGTACCAAGTTGTTCTTGGGATAACAACCGGTTTTCACCCGGTAGTTAGCCATGTTATCCACAGATAATGGGATAAAAAACCTGCAAAAAAGAGCGAAATTTACAAAACTCATCGCTGTAAAAGGGGATTTAGCGGATCGGAAAGACGATCGCAGACCGATCCTCACCCTGTmioC
gidAGGTACTGCACCTCGCGGCTTGTGCGAATTAAGGGATGTTGCTGAGGGCGTGGATTCTACTCAACTTTAGACGATGGGGAAAGCACCGGGATCTTCGTGTATTAAAAAGAAGATCTTTTTTATTTAGAGATCTCTTTATTAGATCTTCTATTAGGATCGACGATCTCTGTGGATAAGCCCTTTTTCTCAATCATGATCAGATCGTTAGTGACGATCACTAACTGTGAACGATCGGTGATCCTGTACCGTATAAGCTGGGATCAAAATGGCATGTTATGCACAGGCTCAGTCCAGGTACCAAGTTGTTCTTGGGATAACAACCGGTTTTCACCCGGTAGTTAGCCATGTTATCCACAGATAATGGGATAAAAAACCTGCAAAAAAGAGCGAAATTTACAAAACTCATCGCTGTAAAAGGGGATTTAGCGGATCGGAAAGACGATCGCAGACCGATCCTCACCCTGTmioC
gidAGGTACTGCACCTCGCGGCTTGTGCGAATTAAGGGATGTTGCTGAGGGCGTGGATTCTACTCAACTTTAGACGATGGGGAAAGCACCGGGATCTTCGTGTATTAAAAAGAAGATCTTTTTTATTTAGAGATCTCTTTATTAGATCTTCTATTAGGATCGACGATCTCTGTGGATAAGCCCTTTTTCTCAATCATGATCAGATCGTTAGTGACGATCACTAACTGTGAACGATCGGTGATCCTGTACCGTATAAGCTGGGATCAAAATGGCATGTTATGCACAGGCTCAGTCCAGGTACCAAGTTGTTCTTGGGATAACAACCGGTTTTCACCCGGTAGTTAGCCATGTTATCCACAGATAATGGGATAAAAAACCTGCAAAAAAGAGCGAAATTTACAAAACTCATCGCTGTAAAAGGGGATTTAGCGGATCGGAAAGACGATCGCAGACCGATCCTCACCCTGTmioC
gidAGGTACTGCACCTCGCGGCTTGTGCGAATTAAGGGATGTTGCTGAGGGCGTGGATTCTACTCAACTTTAGACGATGGGGAAAGCACCGGGATCTTCGTGTATTAAAAAGAAGATCTTTTTTATTTAGAGATCTCTTTATTAGATCTTCTATTAGGATCGACGATCTCTGTGGATAAGCCCTTTTTCTCAATCATGATCAGATCGTTAGTGACGATCACTAACTGTGAACGATCGGTGATCCTGTACCGTATAAGCTGGGATCAAAATGGCATGTTATGCACAGGCTCAGTCCAGGTACCAAGTTGTTCTTGGGATAACAACCGGTTTTCACCCGGTAGTTAGCCATGTTATCCACAGATAATGGGATAAAAAACCTGCAAAAAAGAGCGAAATTTACAAAACTCATCGCTGTAAAAGGGGATTTAGCGGATCGGAAAGACGATCGCAGACCGATCCTCACCCTGTmioC
gidaGGTACTGCACCTCGCGGCTTGTGCGAATTAAGGGATGTTGCTGAGGGCGTGGATTCTACTCAACTTTAGACGATGGGGAAAGCACCGGGATCTTCGTGTATTAAAAAGAAGATCTTTTTTATTTAGAGATCTCTTTATTAGATCTTCTATTAGGATCGACGATCTCTGTGGATAAGCCCTTTTTCTCAATCATGATCAGATCGTTAGTGACGATCACTAACTGTGAACGATCGGTGATCCTGTACCGTATAAGCTGGGATCAAAATGGCATGTTATGCACAGGCTCAGTCCAGGTACCAAGTTGTTCTTGGGATAACAACCGGTTTTCACCCGGTAGTTAGCCATGTTATCCACAGATAATGGGATAAAAAACCTGCAAAAAAGAGCGAAATTTACAAAACTCATCGCTGTAAAAGGGGATTTAGCGGATCGGAAAGACGATCGCAGACCGATCCTCACCCTGTmioc
gidAGGTACTGCACCTCGCGGCTTGTGCGAATTAAGGGATGTTGCTGAGGGCGTGGATTCTACTCAACTTTAGACGATGGGGAAAGCACCGGGATCTTCGTGTATTAAAAAGAAGATCTTTTTTATTTAGAGATCTCTTTATTAGATCTTCTATTAGGATCGACGATCTCTGTGGATAAGCCCTTTTTCTCAATCATGATCAGATCGTTAGTGACGATCACTAACTGTGAACGATCGGTGATCCTGTACCGTATAAGCTGGGATCAAAATGGCATGTTATGCACAGGCTCAGTCCAGGTACCAAGTTGTTCTTGGGATAACAACCGGTTTTCACCCGGTAGTTAGCCATGTTATCCACAGATAATGGGATAAAAAACCTGCAAAAAAGAGCGAAATTTACAAAACTCATCGCTGTAAAAGGGGATTTAGCGGATCGGAAAGACGATCGCAGACCGATCCTCACCCTGTmioC
gidAGGTACTGCACCTCGCGGCTTGTGCGAATTAAGGGATGTTGCTGAGGGCGTGGATTCTACTCAACTTTAGACGATGGGGAAAGCACCGGGATCTTCGTGTATTAAAAAGAAGATCTTTTTTATTTAGAGATCTCTTTATTAGATCTTCTATTAGGATCGACGATCTCTGTGGATAAGCCCTTTTTCTCAATCATGATCAGATCGTTAGTGACGATCACTAACTGTGAACGATCGGTGATCCTGTACCGTATAAGCTGGGATCAAAATGGCATGTTATGCACAGGCTCAGTCCAGGTACCAAGTTGTTCTTGGGATAACAACCGGTTTTCACCCGGTAGTTAGCCATGTTATCCACAGATAATGGGATAAAAAACCTGCAAAAAAGAGCGAAATTTACAAAACTCATCGCTGTAAAAGGGGATTTAGCGGATCGGAAAGACGATCGCAGACCGATCCTCACCCTGTmioC
gidAGGTACTGCACCTCGCGGCTTGTGCGAATTAAGGGATGTTGCTGAGGGCGTGGATTCTACTCAACTTTAGACGATGGGGAAAGCACCGGGATCTTCGTGTATTAAAAAGAAGATCTTTTTTATTTAGAGATCTCTTTATTAGATCTTCTATTAGGATCGACGATCTCTGTGGATAAGCCCTTTTTCTCAATCATGATCAGATCGTTAGTGACGATCACTAACTGTGAACGATCGGTGATCCTGTACCGTATAAGCTGGGATCAAAATGGCATGTTATGCACAGGCTCAGTCCAGGTACCAAGTTGTTCTTGGGATAACAACCGGTTTTCACCCGGTAGTTAGCCATGTTATCCACAGATAATGGGATAAAAAACCTGCAAAAAAGAGCGAAATTTACAAAACTCATCGCTGTAAAAGGGGATTTAGCGGATCGGAAAGACGATCGCAGACCGATCCTCACCCTGTmioC
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif GACGATC

StartP-valueSite
4375.09e-05GGATCGGAAAGACGATCGCAGACCGAT
2095.09e-05GATCGTTAGTGACGATCACTAACTGTG
1585.09e-05TATTAGGATCGACGATCTCTGTGGATA
2261.12e-04ACTAACTGTGAACGATCGGTGATCCTG
1081.84e-04GTATTAAAAAGAAGATCTTTTTTATTT

Motif CCGRTYYTCACCCKGT

StartP-valueSite
4493.87e-10CGATCGCAGACCGATCCTCACCCTGT
3208.21e-10GGGATAACAACCGGTTTTCACCCGGTAGTTAGCCAT

Motif CATGTTATSCACAG

StartP-valueSite
3433.56e-09GGTAGTTAGCCATGTTATCCACAGATAATGGGAT
2697.76e-09ATCAAAATGGCATGTTATGCACAGGCTCAGTCCA
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI92520062 100.0 464 0 0 1 464 1 464 0.0 857
ORI96000391 88.286 461 45 9 1 455 1 458 0.0 544
ORI93020116 89.63 405 32 8 1 400 1 400 0.0 507
ORI93020115 89.63 405 32 8 1 400 1 400 0.0 507
ORI94030311 81.944 360 56 9 1 355 1 356 0.0 296
ORI96000387 79.556 225 34 9 109 327 270 52 2.53e-37 150
ORI93020109 79.556 225 34 9 109 327 270 52 2.53e-37 150
ORI93020091 79.888 179 28 6 109 283 270 96 1.53e-29 124