RefSeq NC_019355
DoriC accession number pORI00000121
OriC length 1219 nt
OriC AT content 0.6768
The location of oriC region 1095..2313 nt
Browse in NCBI
OriC map
OriC sequences
AATTATAAAGCAAAAGATATAAATGCTTTATTTTATATCCCTTACTGTCCATTTTTATATCCCTTGCTGTCCATTTTTATATCCCTTGCTGTCCATTTTTATATCCCTTACTGTCCATTTTTATATCCCTTACCCCCGTTTCGCTCTTACGCGCTTAATGGATACAAAACTCCTAGCAGTATATCCTAGCAGTATATATTAGTAGTATATATTAGCAGTCTATCTTAGAGCGCGCGACACTCAAGCTATATAGATATGAAATTAAACAAATTAAATCTTAACAATTCCATTTTATTCAAATTTTTCTAAAGAAACTAGCTCTTTTGCCAGCTATCATTTATACTTTAAACCAATACTTTTAGAGTATTAAAAAAGCACAAAGAAGATTTTTTCGGTAGGTCTTCTTTGCGCTTTTTTCTTTATTTTATTTTACATTTATCATCTTTAGAAATTTTCTCGGCATAAATGCGTGTTCTATTTTTTATTTTTACTCATCTTGATAGCAAAAAATGCCATTCCAATACAAAACCACATACCTATAATCGATAACCAAATAATACTCATAAAAGTACTCCTTTTTTGCAAACTTTATCATAAAAGATCCAAACGTTAAATGCCTTTATTTTGAATTTTAAAGGGGGCATTTTAGACATGAAAAAATAGACCAAAACGTTTGGCAAGTTTGTATTTTTTTACGCCATATTAAAACCAAAAATGAAATCCTTAACCCCACTATAGAACCAATCATTCACTTTAAAAGAACGAGAACCTTTTCATCATTGCTCCAAAATTTAAAATCATGTTGTCAAAATGCAAATGAATTGTTCTACCATGTTCCATCATTTTATGCGTTCTTTTCTCGTGTCCAATAACATGAGTTACTCGCAATGCGTTTCTCAATCAATGAGTAAAGGATATAAAAATGGACAACAAGGACAAAACAAGAAATCATCAAGCTAACCTCATAAATCTCAAAATTAGCGGTTTGTTTTCTTGCTGTTGCTTTTGAAAGGAAAGCTCGCTCCTTTTTCCCTGCGCAAGTATTCAAACAGCTGAGAGAGCTTTTGAGAGCTTTTTAAAGGGAAAGGGGCATTTATAAGACAGGGCAAAAGCTTTTCGCTTAGAAACGACTCATAGCTTCTCTAAGAACTTTTCACTTTCGCCTGTCCTTTTATACCTTTTTGAGTCCAAAAACGCTTAGAAAGCAAATGAACCCCGT
AATTATAAAGCAAAAGATATAAATGCTTTATTTTATATCCCTTACTGTCCATTTTTATATCCCTTGCTGTCCATTTTTATATCCCTTGCTGTCCATTTTTATATCCCTTACTGTCCATTTTTATATCCCTTACCCCCGTTTCGCTCTTACGCGCTTAATGGATACAAAACTCCTAGCAGTATATCCTAGCAGTATATATTAGTAGTATATATTAGCAGTCTATCTTAGAGCGCGCGACACTCAAGCTATATAGATATGAAATTAAACAAATTAAATCTTAACAATTCCATTTTATTCAAATTTTTCTAAAGAAACTAGCTCTTTTGCCAGCTATCATTTATACTTTAAACCAATACTTTTAGAGTATTAAAAAAGCACAAAGAAGATTTTTTCGGTAGGTCTTCTTTGCGCTTTTTTCTTTATTTTATTTTACATTTATCATCTTTAGAAATTTTCTCGGCATAAATGCGTGTTCTATTTTTTATTTTTACTCATCTTGATAGCAAAAAATGCCATTCCAATACAAAACCACATACCTATAATCGATAACCAAATAATACTCATAAAAGTACTCCTTTTTTGCAAACTTTATCATAAAAGATCCAAACGTTAAATGCCTTTATTTTGAATTTTAAAGGGGGCATTTTAGACATGAAAAAATAGACCAAAACGTTTGGCAAGTTTGTATTTTTTTACGCCATATTAAAACCAAAAATGAAATCCTTAACCCCACTATAGAACCAATCATTCACTTTAAAAGAACGAGAACCTTTTCATCATTGCTCCAAAATTTAAAATCATGTTGTCAAAATGCAAATGAATTGTTCTACCATGTTCCATCATTTTATGCGTTCTTTTCTCGTGTCCAATAACATGAGTTACTCGCAATGCGTTTCTCAATCAATGAGTAAAGGATATAAAAATGGACAACAAGGACAAAACAAGAAATCATCAAGCTAACCTCATAAATCTCAAAATTAGCGGTTTGTTTTCTTGCTGTTGCTTTTGAAAGGAAAGCTCGCTCCTTTTTCCCTGCGCAAGTATTCAAACAGCTGAGAGAGCTTTTGAGAGCTTTTTAAAGGGAAAGGGGCATTTATAAGACAGGGCAAAAGCTTTTCGCTTAGAAACGACTCATAGCTTCTCTAAGAACTTTTCACTTTCGCCTGTCCTTTTATACCTTTTTGAGTCCAAAAACGCTTAGAAAGCAAATGAACCCCGT
AT-rich region
The information of repeat sequences

Motif TTTTATATCCCTTRCTGTCC

StartP-valueSite
752.64e-12TGCTGTCCATTTTTATATCCCTTGCTGTCCATTTTTATAT
532.64e-12TACTGTCCATTTTTATATCCCTTGCTGTCCATTTTTATAT
979.37e-12TGCTGTCCATTTTTATATCCCTTACTGTCCATTTTTATAT
319.37e-12AAATGCTTTATTTTATATCCCTTACTGTCCATTTTTATAT
1199.49e-11TACTGTCCATTTTTATATCCCTTACCCCCGTTTCGCTCTT

Motif TTTTTAYWSCTTTTKAAAGSMAAAAAYGC

StartP-valueSite
10632.23e-13CTGAGAGAGCTTTTGAGAGCTTTTTAAAGGGAAAGGGGCATTTATAAGA
11691.75e-11TTCGCCTGTCCTTTTATACCTTTTTGAGTCCAAAAACGCTTAGAAAGCA
9941.92e-11GTTTGTTTTCTTGCTGTTGCTTTTGAAAGGAAAGCTCGCTCCTTTTTCC
4852.71e-11CTATTTTTTATTTTTACTCATCTTGATAGCAAAAAATGCCATTCCAATA
6901.62e-10AGTTTGTATTTTTTTACGCCATATTAAAACCAAAAATGAAATCCTTAAC

Motif TAGCAGTATAT

StartP-valueSite
1875.41e-07CAGTATATCCTAGCAGTATATATTAGTAGTA
1745.41e-07ACAAAACTCCTAGCAGTATATCCTAGCAGTA
2131.29e-06TAGTATATATTAGCAGTCTATCTTAGAGCGC
2003.69e-06CAGTATATATTAGTAGTATATATTAGCAGTC
9793.78e-06ATCTCAAAATTAGCGGTTTGTTTTCTTGCTG
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000121 100.0 1219 0 0 1 1219 1 1219 0.0 2252
pORI00000121 100.0 35 0 0 97 131 31 65 1.97e-11 66
pORI00000121 100.0 35 0 0 31 65 97 131 1.97e-11 66
pORI00000120 100.0 1219 0 0 1 1219 1 1219 0.0 2252
pORI00000120 100.0 35 0 0 97 131 31 65 1.97e-11 66
pORI00000120 100.0 35 0 0 31 65 97 131 1.97e-11 66
pORI00000070 99.918 1220 0 1 1 1219 1 1220 0.0 2246
pORI00000070 100.0 35 0 0 97 131 31 65 1.97e-11 66
pORI00000070 100.0 35 0 0 31 65 97 131 1.97e-11 66
pORI00000267 98.285 933 10 5 290 1219 22 951 0.0 1629
pORI00000190 92.401 658 22 12 568 1215 643 4 0.0 913
pORI00000190 91.905 210 14 3 290 499 979 773 0.0 291
pORI00000266 91.704 663 27 12 562 1215 621 1264 0.0 894
pORI00000266 96.994 499 13 2 1 499 1 497 0.0 837
pORI00000266 98.246 57 1 0 31 87 75 131 5.4e-22 100
pORI00000266 100.0 35 0 0 97 131 31 65 1.97e-11 66
pORI00000266 100.0 35 0 0 31 65 97 131 1.97e-11 66
pORI00000189 91.704 663 27 12 562 1215 621 1264 0.0 894
pORI00000189 96.994 499 13 2 1 499 1 497 0.0 837
pORI00000189 98.246 57 1 0 31 87 75 131 5.4e-22 100
pORI00000189 100.0 35 0 0 97 131 31 65 1.97e-11 66
pORI00000189 100.0 35 0 0 31 65 97 131 1.97e-11 66
pORI00000148 89.109 202 18 4 449 648 279 478 0.0 248
pORI00000145 92.105 152 12 0 449 600 724 573 0.0 215
pORI00000230 88.158 152 18 0 449 600 753 602 0.0 182