DoriC

RefSeq

NC_005208

DoriC accession number

pORI00000279

OriC length

363 nt

OriC AT content

0.708

The location of oriC region

1788..2150 nt

Browse in NCBI

OriC map

OriC sequences

GTTATAACACAACAAAACAACTTAGTTTTACACAAACTAATGCCATAAAAAAGTTGCTTTTTCTCCTTTCTTGTAAAGTTTTGGCTTGGACACCATAAACTCTACTATACTAGGTATGAAAAAGCAACTTTTTTTATGCTCGAAACCAGATACACCAACAGATTAAGGGTAACTATTATAGCTTGTAATAGTTACCTATAGTATCAAGACAAGAAGAAACTCGTTTTCAACTCGTTTCAAAAACCTTTCAAAAACCATCAATCCACAAAAATACCACGCGAATGACACTCAAAATACAAGACTACAATTAAAAAATACTTAGAATAAAATTAAATAAAATACGAAAATTAAAAGGAGTTAAAA

AT-rich region

The information of repeat sequences

Motif TWGCTTGT

Start	P-value		Site
82	5.68e-06	TGTAAAGTTT	TGGCTTGG	ACACCATAAA
179	1.28e-05	GTAACTATTA	TAGCTTGT	AATAGTTACC
67	4.30e-05	CTTTTTCTCC	TTTCTTGT	AAAGTTTTGG
54	4.30e-05	CATAAAAAAG	TTGCTTTT	TCTCCTTTCT

Motif CTCGTTT

Start	P-value		Site
231	2.15e-05	TCGTTTTCAA	CTCGTTT	CAAAAACCTT
220	2.15e-05	CAAGAAGAAA	CTCGTTT	TCAACTCGTT

Motif CKCGAA

Start	P-value		Site
277	7.80e-05	AAAAATACCA	CGCGAA	TGACACTCAA
139	2.70e-04	TTTTTTTATG	CTCGAA	ACCAGATACA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000279	100.0	363	0	0	1	363	1	363	0.0	671
pORI00000202	83.673	245	28	12	3	241	261	23	0.0	220
pORI00000278	81.557	244	38	7	1	241	262	23	0.0	195
pORI00000005	100.0	49	0	0	197	245	151	199	9.32e-20	92
pORI00000275	100.0	45	0	0	197	241	67	23	1.56e-17	84
pORI00000231	100.0	45	0	0	197	241	67	23	1.56e-17	84
pORI00000207	100.0	45	0	0	197	241	67	23	1.56e-17	84
pORI00000204	100.0	45	0	0	197	241	67	23	1.56e-17	84
pORI00000146	100.0	45	0	0	197	241	67	23	1.56e-17	84
pORI00000100	100.0	45	0	0	197	241	67	23	1.56e-17	84
pORI00000025	100.0	45	0	0	197	241	67	23	1.56e-17	84
pORI00000233	100.0	43	0	0	199	241	65	23	2.02e-16	81
pORI00000277	100.0	37	0	0	205	241	59	23	4.37e-13	69
pORI00000327	100.0	30	0	0	216	245	250	279	3.4e-09	57