RefSeq NC_004562
DoriC accession number pORI00000005
OriC length 323 nt
OriC AT content 0.7183
The location of oriC region 1105..1427 nt
Browse in NCBI
OriC map
OriC sequences
ATAAAAAGCCCCCAGTTTTGATTTTGATTCGACACCTTAATCATATAACTGGGGTTTTTTCATGTCAAATTTTCTTTCAACGACAAAAACAACTAAAAATACTGTAGTATCAACGTTCAAGTGACTTTTTATATCTTTGAGTTATTTCTATATAGTATCAAGACAAGAAGAAACTCGTTTTCAACTCGTTTCAAAAACCCCCTCAAATTTTTGAAATCACAAAAATCAATACCTCGCGAATCACAAGAAAAATACAAGGCTTTTATTTTAATCCCACATAAGCTAAAATTTAAATTATTAAACTTTAAAAAAGGATGATAATA
ATAAAAAGCCCCCAGTTTTGATTTTGATTCGACACCTTAATCATATAACTGGGGTTTTTTCATGTCAAATTTTCTTTCAACGACAAAAACAACTAAAAATACTGTAGTATCAACGTTCAAGTGACTTTTTATATCTTTGAGTTATTTCTATATAGTATCAAGACAAGAAGAAACTCGTTTTCAACTCGTTTCAAAAACCCCCTCAAATTTTTGAAATCACAAAAATCAATACCTCGCGAATCACAAGAAAAATACAAGGCTTTTATTTTAATCCCACATAAGCTAAAATTTAAATTATTAAACTTTAAAAAAGGATGATAATA
AT-rich region
The information of repeat sequences

Motif CTSGSG

StartP-valueSite
497.59e-06AATCATATAACTGGGGTTTTTTCATG
2335.34e-05AAATCAATACCTCGCGAATCACAAGA

Motif CCCCCWS

StartP-valueSite
91.33e-05ATAAAAAGCCCCCAGTTTTGATTTT
1982.33e-05GTTTCAAAAACCCCCTCAAATTTTTGA

Motif CTCGTTT

StartP-valueSite
1853.83e-05TCGTTTTCAACTCGTTTCAAAAACCCC
1743.83e-05CAAGAAGAAACTCGTTTTCAACTCGTT
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000005 100.0 323 0 0 1 323 1 323 0.0 597
pORI00000231 95.897 195 8 0 1 195 217 23 0.0 316
pORI00000204 86.364 198 22 5 1 195 218 23 0.0 211
pORI00000100 84.925 199 24 6 1 195 219 23 0.0 196
pORI00000207 84.925 199 23 7 1 195 218 23 0.0 195
pORI00000025 84.925 199 23 7 1 195 218 23 0.0 195
pORI00000146 84.08 201 23 9 1 195 220 23 0.0 185
pORI00000275 80.597 201 28 11 1 195 218 23 6.23e-36 145
pORI00000233 78.283 198 37 6 1 195 217 23 2.92e-29 122
pORI00000279 100.0 49 0 0 151 199 197 245 8.23e-20 92
pORI00000278 100.0 40 0 0 156 195 62 23 8.29e-15 75
pORI00000202 100.0 40 0 0 156 195 62 23 8.29e-15 75
pORI00000277 100.0 37 0 0 159 195 59 23 3.86e-13 69
pORI00000327 100.0 30 0 0 170 199 250 279 3e-09 57