DoriC

RefSeq

NC_010886

DoriC accession number

pORI00000436

OriC length

2301 nt

OriC AT content

0.5528

The location of oriC region

70601..72901 nt

Browse in NCBI

OriC map

OriC sequences

GGCCTTTGAATAAGACAAAACGCTGCCTCATCGCTAACTTTGCAACAGTGCCCGCTCAGCTGGTTGGTAACTATTTTCAACCCGGACTCCAGATCACCTGGGCCAGCTTCAAGGCAGCGCCGCAGATACTCTGACCGATTACCACCTGAAACCAGGTCTATATAGGCCAAAAGTTCATCTGATACTTTTGCGGTTATTGTTGGCATTCAGTCCTCACTTTGTGCATTTTTTAAACGAAAAAAGGGTGTCTAATACGGTGAAATCATAGTATTACCAAAGTAATAAATAAAAAATGTTTTAAATCAGTAAGTTAGATTAGATTTGTAATACCTGGGTAATACCGCAGCATGGTTAAATTTGGTTTTTTTTCTTTTAAATCAGTGAGATAGCGTGATTTATCACGCTGCGTTAGGTGTATAGCAGGTTAAGGGATAAAAAATCATCTTTTTTTGGTAGGGCGATCTCCGTAGGTTAAGGGTCATTTGGCTAAAAAGCGTCCTATTCTTTGATGGTCATGCTTGCATGACCATCTGAGCAACCAAAAACTACAGATAAACTACAGATAAACTACAAAAAACGTTTTGCCTTAGTGTTGGAAGACTACAAATAGACTACAATAAAACTACAAAGAAACTACAAAAAACGTGACAGACTACAAATAGACTACAAGAAAACTACAGATAAACTACAAAACTCGATTGACCCCTTCTTACGAGTGTTGTAGAGTCATTTTCATACAACGGAGGGGGTTATGAATAAACCAGCAGATCTGAAACCCCGCAACTTATCGGCTGCTGTCAGATTGCGCCTAAATGAAATCGAGAACTGGCTGGACAGAGGGCTAACGCGGCATGAAATTGCTGAAATCCTCGACAGCGAATACAGCTTTTCGGTAACAGCCAAAGGGCTTGAGATGGCACTGTATAGAACGCGGCAAAACCGAAAAAATGTATTGCACAATACACATGATAAGAGTAGCGCGAAGGGTGCAGCGGAAAGTGTATTGCACAATACACAACCGTCTGAGCCTGAAGCGCAGGAAAGTGAAAAAGCAGAGAGTCCCGGCATTATTGATAAAGAATTCTTCAATAAAATCGGTGAGAATTTCGACCCTAAGAAGTTCAACAAAAAATTCTGAGGTGATTTATGAAAGTAGCGGTAATTAATTACAGTGGCAGTGTTCGTAAAACCTTAATTTCATCTTACCTGTTAGCCCCGCGGCTGACTGGTGCAAAGTTCTATGCGGTAGAGACTATCAACCAGTCTGCTTCCGATCTGGGTATTGAAAATGTGACCAGTTTTAAAGGTGACGACTTCTCACGTTTGATTGAGGGGTAATGACTCCAACTTACTGGTAGTGTTTTATGTTCAGATAATGTCCAATGACTTTGTCATGCAGTTCTCCCTTCAGGCGTGATTCATAAAGCGGCCAGTCATCCGTCATCCATACCACGACCTCAAAGGCCGACAGCAGGCCCGGAAGACGCTCCAGCGTGGCCAGAGTGCGTTCACCGAAGACGTGCGCCACAACCGTCCTCCGTATCCTGTCATACGCGTAAAACAACCAGCGCTGGCGTGATTTAGCGCCGACGAACCCCACTGTTCGTCTATTTCCGCGCAAACAATGACGTCACTGCCCGGTTGTATGCGTGAGTTTACCGACTGCGGCCTGAGAGGCGGTGTAAGTGAACTGTAGCTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCAGTACTTTTACCGTTACGCACCACGCCTTCAGTAGCTGAGCAGGAGGGACAAGTGATGGAGATGGAAGCCACTGGAGCACCTCAAAACCACCATCATACACTAAATCAGCAAGTTGGTAGCATTACCCAGAACTGGACAGAATAGGCTGTATGTCTAACTTCTGGCCACAGATATAATCGAGCCAGCAGTGCTCGCCGCAGCCGAGCGACAGGGCGAAGCCCCGAGTGAGCGAGGAAGCACCATGGAACAGTACTCATAAATTCTGCATACGCTCAATGCCTGCAAAATCACCTCCCATAGGGGTTATCCACTTATCCACGGGGATATTTTTATAAGATCTTTTTAAATAGTTGTTAGATTTTTATTTTTAGAATGCCCACAGGCCTTTATCCATGCGGGTTCCAGAGAGGGATCTGTGACAAAACGCCCTTTCAGTGTGACAAATCACCCTCAAATAGCCGCCATTTCTGTGACAAGTTGCCCTTAACCCTGTGACAAATTGCCCTCAGGAAGCGTTGCTTTTCACAAAGTTATCCATCCCTGTTGACTCTGTTTT

AT-rich region

The information of repeat sequences

Motif ACTACARATARACTACAAAAA

Start	P-value		Site
556	4.54e-12	CTACAGATAA	ACTACAGATAAACTACAAAAA	ACGTTTTGCC
652	1.05e-11	AACGTGACAG	ACTACAAATAGACTACAAGAA	AACTACAGAT
600	1.50e-11	GTGTTGGAAG	ACTACAAATAGACTACAATAA	AACTACAAAG
674	1.86e-11	CTACAAGAAA	ACTACAGATAAACTACAAAAC	TCGATTGACC
622	1.86e-11	CTACAATAAA	ACTACAAAGAAACTACAAAAA	ACGTGACAGA

Motif CTGTGACAAATYRCCCTY

Start	P-value		Site
2235	1.19e-11	GCCCTTAACC	CTGTGACAAATTGCCCTC	AGGAAGCGTT
2213	2.50e-10	GCCGCCATTT	CTGTGACAAGTTGCCCTT	AACCCTGTGA
2180	7.38e-10	CGCCCTTTCA	GTGTGACAAATCACCCTC	AAATAGCCGC
2159	7.38e-10	AGAGAGGGAT	CTGTGACAAAACGCCCTT	TCAGTGTGAC
129	1.68e-08	GCCGCAGATA	CTCTGACCGATTACCACC	TGAAACCAGG

Motif KCTGGCGTGATTTA

Start	P-value		Site
1570	2.65e-09	AACAACCAGC	GCTGGCGTGATTTA	GCGCCGACGA
1408	2.18e-07	AGTTCTCCCT	TCAGGCGTGATTCA	TAAAGCGGCC
1134	2.18e-07	AACAAAAAAT	TCTGAGGTGATTTA	TGAAAGTAGC
385	2.32e-07	AAATCAGTGA	GATAGCGTGATTTA	TCACGCTGCG
1696	3.67e-07	GTGAACTGTA	GCTGCCATGTTTTA	CGGCAGTGAG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
pORI00000436	100.0	2301	0	0	1	2301	1	2301	4250
pORI00000314	90.411	219	8	3	403	621	1265	1470	276
pORI00000075	90.411	219	8	3	403	621	1265	1470	276