DoriC

RefSeq

NC_004960

DoriC accession number

pORI00000378

OriC length

1473 nt

OriC AT content

0.6728

The location of oriC region

6655..269 nt

Browse in NCBI

OriC map

OriC sequences

TGAATGTTTAGAACTTAGTAGTCGTCCAAAAACGACTACTTTTTTTGTTGAATCGTCCTTGGACGATTCAATGCTTTTGACTTGTAAGAACAGGATTGAATGAAGCCATACTGTTCGCATATTTTTAGTGGATGAACAAATAAAATACGAGAGATTTTTTGTTTGTTCATCCATGGTTTTAGAAAAAAGAGGGACGATTTCGGAAGAAGAAAATCGTCTCTTTTTTTCTTCTTTTTGTATGACAAAAAGAAAGATCTTTTGCCCATTTTATTTTTATAAAATGGGGAGGTGGCGTTTGCCTAAAGCAAATCGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTACTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTATAGTTGCTATTTTGTTATGAGGATTGTAACCGAATAGGGCGCAATACTTATTACAAATCAATGACAAAGGGCGATTGAGGAATGAGCGCTGAGGCATTTTATCTTTGAGTAAGTTATTGATGGATCAGAAAAATGTATCACAAATTGAAACAAAGACTCACTCATTTAAGAGAAGCTACTATCATGAAATTTTGTTGTTGTGATAAGCAACTTCTAATACACGATTTTTAGCCATTACATCACTCGTTTTTAGAGTGATGTGTAAGTGCGCATTGCACTCTTTTTTTACGAAACAAGCCGACCAGCGTTTGAAACTTCTTAGTTTTTCATCATTCTATTTTAAAACGTTCTAAAACTCGATTTAAGCGACTTTAATTCGAAACTGTCTATTTGTTCAAAGGGAGCATTAAGAATGCTTAAACGAGCTTTTAAGGGGGTTTAAATTGATTTTGAATTGAATAGCTTGTTGTAAGTTGTAAAAAAAACAAGTTAAACAAAGTATCAGTTTTCCATTTAAGGGTTGTTAGGGCTTGCCCTGACCGTCTGTAAGACGCTTGATTGCATGATATGAGTATTTAGCTAGTCAAACAGTTAAAACAGCTTATATGAGCAATTAGAGGGAATCCAATAAATTCCTAAAAGCGGTTTTGATCTTTTCTTTTAGCGAGTGAACGCTGCAAGTAAAATGTGAGCGTGGTTTTCGCTCACTCTTTTTTTTGATGACTTTGACCTTTGGTTTTACATTTTTGAAAAAAATAAAAAAAGGCGAAGCCTATATTAATTTATCTTATATATTTTAATCTTTTGTTCTTTTGCGTGAAAAAAAAGTCAGTGTTTTCGCTAGTTACAGAATTTATAGTGATACAAAAATCGATGTATAGTGATACAAAAATCGATGTATAGTGATACAAAAATCGATGTATAGTGATACAAAGAATTGAAAAAGTATCACTATAATGATATAATAAAAGCATGAAGAAAAAACTTTTTGCAGAGCATTTCTTCATGCTTAACCAAAATCACTCACAAAGGAGCAATTACT

AT-rich region

The information of repeat sequences

Motif CGATGTATAGTGATACAAAAA

Start	P-value		Site
1325	1.82e-12	ATACAAAAAT	CGATGTATAGTGATACAAAAA	TCGATGTATA
1303	1.82e-12	ATACAAAAAT	CGATGTATAGTGATACAAAAA	TCGATGTATA
1347	2.85e-12	ATACAAAAAT	CGATGTATAGTGATACAAAGA	ATTGAAAAAG
1281	4.75e-11	GCTAGTTACA	GAATTTATAGTGATACAAAAA	TCGATGTATA

Motif ADGGGDARKTGRGGHTTGCCC

Start	P-value		Site
947	3.52e-10	TTTTCCATTT	AAGGGTTGTTAGGGCTTGCCC	TGACCGTCTG
281	6.55e-10	TTTTTATAAA	ATGGGGAGGTGGCGTTTGCCT	AAAGCAAATC
334	3.08e-09	AGGGGATAAA	AGGGGAAAGTGAAACTTCCCC	CTTTTCAAGC
689	3.63e-09	TTTTAGAGTG	ATGTGTAAGTGCGCATTGCAC	TCTTTTTTTA
498	1.87e-08	ATCAATGACA	AAGGGCGATTGAGGAATGAGC	GCTGAGGCAT

Motif CGADWSAAKSC

Start	P-value		Site
720	3.01e-07	TCTTTTTTTA	CGAAACAAGCC	GACCAGCGTT
311	9.86e-07	TAAAGCAAAT	CGACACAATCC	AAAGGGGATA
1096	4.70e-06	TTTCTTTTAG	CGAGTGAACGC	TGCAAGTAAA
64	4.70e-06	CGTCCTTGGA	CGATTCAATGC	TTTTGACTTG
97	8.39e-06	AGAACAGGAT	TGAATGAAGCC	ATACTGTTCG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000378	100.0	1473	0	0	1	1473	1	1473	0.0	2721
pORI00000378	95.349	43	1	1	1327	1369	1283	1324	6.64e-12	68
pORI00000378	95.349	43	1	1	1283	1324	1327	1369	6.64e-12	68
pORI00000208	92.121	1485	86	23	1	1465	1	1474	0.0	2065
pORI00000007	92.528	1432	77	29	1	1413	1	1421	0.0	2025
pORI00000078	92.345	1437	79	20	1	1413	1	1430	0.0	2015
pORI00000507	97.263	1096	25	5	1	1093	1	1094	0.0	1853
pORI00000507	85.385	260	31	7	1156	1413	1092	1346	0.0	263
pORI00000397	96.055	583	19	4	452	1032	1535	955	0.0	946
pORI00000397	82.875	327	40	15	1156	1473	320	1	0.0	279
pORI00000349	89.552	201	18	3	1156	1355	1139	1337	0.0	252
pORI00000797	94.737	133	4	3	1139	1268	336	204	0.0	204
pORI00000790	94.737	133	4	3	1139	1268	1187	1319	0.0	204
pORI00000849	84.259	216	20	13	1156	1365	422	629	0.0	198
pORI00000532	84.259	216	20	13	1156	1365	624	831	0.0	198
pORI00000408	84.259	216	20	13	1156	1365	422	629	0.0	198
pORI00000847	80.524	267	31	21	1156	1412	267	522	0.0	185
pORI00000848	78.247	308	47	20	1177	1473	299	1	1.4013e-45	180
pORI00000376	81.193	218	32	1	938	1146	495	712	6.36049e-42	167
pORI00000246	87.611	113	13	1	1156	1267	363	475	8.35e-31	130
pORI00000260	91.045	67	3	3	1186	1249	203	269	5.1e-18	88
pORI00000982	91.667	60	4	1	1191	1249	285	226	2.37e-16	82
pORI00000739	93.182	44	3	0	944	987	558	515	2.39e-11	66