DoriC

RefSeq

NC_004653

DoriC accession number

pORI00000078

OriC length

1441 nt

OriC AT content

0.6711

The location of oriC region

287..1727 nt

Browse in NCBI

OriC map

OriC sequences

TGAATGTTTAGAACTTAGTAGTCGTCCAAAAACGACTACTTTTTTTGTTGAATCGTCCAAGGTCGATTCGATGCTTTTGACTTGTAAGAACAGGATTGAATGAAGCCATACTGTTCGCATATTTTTAGTGGATGATCAAACAAAATACGAGAGATTTTTTGTTCGTTCATCCATGGTTTTAGAAAAAAGAGGGACGATTTCGGAAGAAGAAAATCGTCTCTTTTTTTTCTTCTTTTTGTATGACAAAAAGAAAGATCTTTTGCCCATTTTTATTTTTTATAAAATGGGCAGGTGGCGTTTGCGTAAAGCAAATCGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTATATTTCCTATTTTGTTGTGAGGATTGTAACCGAATAGGGCGCAATGCTTATTACAAAATCAATGACAAAGGGCGAGTGAGGAATGAGCGCTGAGGCATTTTATCTTTGAGGAAGTTCTTGATGGATCAGAAAAATGTATCACAAATTTAAACAAAGACTCACTCATTTAAGAGATGCTACTATCATGAAATTTTGTTGTTGCGATAAGCAACTTCTGATACACGATTTTTAGCCATTACATCACTCGTTTTTTAGAGTGATGTGTAAGTGCGCATTGCACTCTTTTTTAACGAAACAAGCCGACCAGCGTTTGAAACTTTTTAGTTTTTCATCATTCTATTTTAAAACGCTCTAAAACTCGATTTAAGCGACTTTAATTCGAGACTGCCTATATTTGTTCAAAGGGAGCATTAAGAATGCTTAAATGAGCTTTTAAGTGGGTTTAAATTGATTTTGAGTTGAATATCTTGTTGTAAGTTGTAAAAAAACAAGTTAAACAAAGTATCGGTTTTCCATTTAAGGGTTGTTAGGGCTTGCCCTGACCGTCTGTAAGACGCTTGATTGCATGATATGAGTATTTAGCTAGTCAAACAGTTAAAACAGCTTATATGAGCAATTAGAGGGAATCCAATAAATTCCTAAAAGCGGTTTTGATCTTTTCTTTTAGCGAGGGAACGAAGTGAACGCTGCAAGTAAAATGTGAGCGTGGTTTTCGCTCGCTCCTTTTTTGATGATTTTGACCTTTATTTTTACATTTTTGAGAAAAATAAAAAATAGGCGAAGCCTTATTATATATTTATCTTATATATTTTAATCTTTTATCTTTTGCGTGAAAAAAAAGTCTGTATTTATAGGCTTATACAAATTTTTATAGCAAGAAAAAACTATGTATATAGCAAGAAAAAACTATGTATATAGCAAGAAAAAACTATGTATATAGCAAGAAAAAACTATAAAAACTTGCTGTATTATGATATAATAAAAGCATAGAGAAAATTCACGACGAA

AT-rich region

The information of repeat sequences

Motif TATATAGCAAGAAAAAACTAT

Start	P-value		Site
1368	5.50e-12	AAAAACTATG	TATATAGCAAGAAAAAACTAT	AAAAACTTGC
1346	5.50e-12	AAAAACTATG	TATATAGCAAGAAAAAACTAT	GTATATAGCA
1324	5.50e-12	AAAAACTATG	TATATAGCAAGAAAAAACTAT	GTATATAGCA
1302	1.12e-11	TATACAAATT	TTTATAGCAAGAAAAAACTAT	GTATATAGCA

Motif GGGHDRKTGDVGCTTGCBC

Start	P-value		Site
286	9.77e-10	TTTATAAAAT	GGGCAGGTGGCGTTTGCGT	AAAGCAAATC
955	1.13e-09	TTCCATTTAA	GGGTTGTTAGGGCTTGCCC	TGACCGTCTG
504	2.07e-08	CAATGACAAA	GGGCGAGTGAGGAATGAGC	GCTGAGGCAT
1138	2.58e-08	TAAAATGTGA	GCGTGGTTTTCGCTCGCTC	CTTTTTTGAT
339	3.73e-08	GGGATAAAAG	GGGAAAGTGAAACTTCCCC	CTTTTCAAGC

Motif GDRCGMADTGC

Start	P-value		Site
471	4.05e-07	TAACCGAATA	GGGCGCAATGC	TTATTACAAA
383	5.67e-07	TGTAATACAA	GAACGAAGTGC	TTTGTATTAC
702	9.27e-07	TGATGTGTAA	GTGCGCATTGC	ACTCTTTTTT
1107	4.04e-06	TTTAGCGAGG	GAACGAAGTGA	ACGCTGCAAG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000078	100.0	1441	0	0	1	1441	1	1441	0.0	2662
pORI00000007	93.694	1443	68	16	1	1436	1	1427	0.0	2139
pORI00000208	92.431	1440	80	27	1	1429	1	1422	0.0	2028
pORI00000378	92.345	1437	79	20	1	1430	1	1413	0.0	2015
pORI00000507	96.906	1099	29	4	1	1099	1	1094	0.0	1836
pORI00000397	96.747	584	16	2	455	1038	1535	955	0.0	970
pORI00000376	84.615	221	34	0	941	1161	492	712	0.0	220
pORI00000375	87.5	104	11	2	1070	1172	426	324	1.77e-27	119
pORI00000739	93.182	44	3	0	950	993	558	515	2.34e-11	66