DoriC

RefSeq

NZ_CP014882

DoriC accession number

pORI00000797

OriC length

1522 nt

OriC AT content

0.6754

The location of oriC region

2289..3810 nt

Browse in NCBI

OriC map

OriC sequences

GGAAATACTCCTTTGTGAGTGATTTTAAGTAGGCATAGAGAAAGACTTTTAGTCGGGTATTTCTCTATGCTTTTATTCTATCAAAATACAGTCAGTTGTTCAATTTTTTCTGACTGTATAAACAGTTTTTCCTGACTGTATAAACAGTTTTTCCTGACTGTATAAACAGTTTTTTCTGACTGTTTAATTCTGCATACGACTGGAAACACTGGCTTTTTTTTCACGCAAAAGAACAAAAGATTAAAATATATAAGATAAATGTAATATAGGCTTCGCCTTTTTTTATTTTTTTCAAAAATTTAAAATCAAAGGTCAAAATCATCCAAAAAAAAAGAGACAGACTGCTCAAGTTTTATATTGAGCAGTCTGTTTCTTTAAATCGTGTTTATACGTGTTTATAGATCTTCTGTTTTAATTTCGTAATAGCCCTCGTAATAATAACTCGCATCAATTCCTTTAAAGAATTGTTTTTTTCCTAAATCATAGGAAATTCCTCGGCACATGGTGCCTGCGGGGCTTTGGTTTGAGGAACTGGCTACATAGTGCCGTAACTTAACAGTTGTGTCTAAGAAATAAAGATAGCGTTACAGAGGCACTGAGAACAGGTCGTTTCTAGTAGTCATAATTAAGTTAGATTTCTACATCGTGATTGTTGTTGATATCTGCATATGAAAAAGGCCCTCTAAAGTTATTTTAGAGGGCCTTTTAAATTGTTTTATATATAAATATATGCAAAATCATCTAAAACACCTTAGAACGCAAATATGAGCTTCTGAGACGCGTTTATCTGCTCATTCCATGCTTCTACTTTTGATTATTGGATACAGGAGTAATCTTTACTCGGGGTGACCTAACTCGTCTAATTTCTTTTTGATTAGAATTAGCTTTTTGATTACTTTCAATAATTTAATTTGTGTCAAGTTAATAACCCTCTATTAGTTTGTCACTGCGTGAGCAAACTATCGAAAACGGGCTCCTGCAGAGAGCAACCATTCCCAACTTTAGTTGGTCATTCTCGCAACTTTTTTCTTCGAAAAATTGCTCACAAGTTCAAGATCAAATGCACTTGCTTTTTAAATTTTCTTCGTCTTTGGACTCGATTAAATTTAAAAAATCAGCAAGTTAGAGTTTAAATTTTACGCTTCGACCTTGTCGGTCTTGTTAGCAATTTTAACTCGAAAATCGAGTGCACTTTGAACTTATTTTTTCAAAATAAGTTCAAAGTCAAAAAGCATTCTCATTCAATTTTTAAGAATCTAAAATTGATATTCGAATCAAAAACCAATCCAAACCAAATATTGACTTCAATCCATCAAATGATAAAATAGTAGTGCCCATAAAGGTCCTTCTTTCTAGTGGAATGTTGTGGTGACACCATTAAAGACCTTTATGGGTTTTTCTGTCCACTAATATGTTCAACTTAAATTTTACAATCTACCATTTAAATTGTATATTTTATTGACAGGGGGCCACAGACCAATTATATATTTGGAACTGTATTAAATTTTGGAGGCCTATTTAC

AT-rich region

The information of repeat sequences

Motif CAGTTTTTYCTGACTGTATAA

Start	P-value		Site
145	1.00e-12	ACTGTATAAA	CAGTTTTTCCTGACTGTATAA	ACAGTTTTTT
123	1.00e-12	ACTGTATAAA	CAGTTTTTCCTGACTGTATAA	ACAGTTTTTC
167	8.88e-12	ACTGTATAAA	CAGTTTTTTCTGACTGTTTAA	TTCTGCATAC
101	1.32e-11	GTCAGTTGTT	CAATTTTTTCTGACTGTATAA	ACAGTTTTTC

Motif ACRKRGKSMYWSAGA

Start	P-value		Site
1462	7.64e-10	TATTTTATTG	ACAGGGGGCCACAGA	CCAATTATAT
587	1.62e-08	AGATAGCGTT	ACAGAGGCACTGAGA	ACAGGTCGTT
969	1.56e-07	ACTATCGAAA	ACGGGCTCCTGCAGA	GAGCAACCAT
500	2.42e-07	ATTCCTCGGC	ACATGGTGCCTGCGG	GGCTTTGGTT
27	8.36e-07	GAGTGATTTT	AAGTAGGCATAGAGA	AAGACTTTTA

Motif CWCKGSGTGASCWAAC

Start	P-value		Site
840	2.55e-10	GTAATCTTTA	CTCGGGGTGACCTAAC	TCGTCTAATT
945	3.80e-10	ATTAGTTTGT	CACTGCGTGAGCAAAC	TATCGAAAAC

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000797	100.0	1522	0	0	1	1522	1	1522	0.0	2811
pORI00000790	98.555	1522	0	1	1	1522	1500	1	0.0	2669
pORI00000208	81.818	330	51	8	6	331	1476	1152	0.0	268
pORI00000507	81.505	319	47	11	4	318	1401	1091	0.0	252
pORI00000848	80.645	310	37	22	8	306	10	307	0.0	219
pORI00000349	81.749	263	36	9	60	318	1392	1138	0.0	209
pORI00000378	94.737	133	4	3	204	336	1268	1139	0.0	204
pORI00000849	93.913	115	4	3	204	318	532	421	5.08671e-43	171
pORI00000847	78.716	296	33	26	37	318	545	266	5.08671e-43	171
pORI00000532	93.913	115	4	3	204	318	734	623	5.08671e-43	171
pORI00000408	93.913	115	4	3	204	318	532	421	5.08671e-43	171
pORI00000397	77.019	322	54	20	8	318	9	321	6.5805e-42	167
pORI00000260	75.556	270	52	11	26	287	466	203	5.19e-28	121
pORI00000982	90.0	60	6	0	223	282	226	285	3.17e-15	79