RefSeq NC_004652
DoriC accession number pORI00000007
OriC length 1480 nt
OriC AT content 0.6662
The location of oriC region 287..1766 nt
Browse in NCBI
OriC map
OriC sequences
TGAATGTTTAGAACTTAGTAGTCGTCCAAAAACGACTACTTTTTTTGTTGAATCGTCCAAGGACGATTCGATGCTTTTGACTTGTAAGAACAGGATTGAATGAAGCCATACTGTTCGCATATTTAAGGGGATGATCAAACAAAATACGAGAGATTTTTTGTTCGTTCATCCATGGTTTTAGAAAAAAGAGGGACGATTTCGGAAGAAGAAAATCGTCTCTTTTTTTTCTTCTTTTTGTATGACAAAAAGAAAGATCTTTTGCCCATTTTTATTTTTTATAAAATGGGCAGGTGGCGTTTGCGTAAAGCAAATCGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTATATGGTCTATTTTGTTGTGAGGATTGTAACCGAATAGGGCGCAATACTTATTACAAAATCAATGACAAAGGGCGATTGAGAAATGAGCGCTGGGGCATTTTATCTTTGAGGAAGTTCTTGATGGATCAGAAAAATGTATCACAAATTTAAACAAAGACTCACTCATTTAAGAGACGCTACTAGCATGAAATTTTGTTGTTGCGATAAGCAACTTCTGATACAGGTTTTTAGGGGTTAGCACGACATCAATTTATTTGATGTGTAAGTGCGCATTGCACTCTTTTTTTACGAAACAAGCCGACCAGCGTTTGAAACTTTTTAGTTTTTCATCATTCTATTTTAAAACGTTCTAAAATTCGATTTAAGCGACTTTAATTCGAAACTGTCTATTTGTTCAAAGGGAGCATTAAAGTCGCTTAAACGAGCTTTTAAGTGGGTTTAAATTGATTTTGAATTGAATAGCTTGTTGTAAGTTGTAAAAAAAACAAGTTAAACAAAGTATCAGTTTTCCATTTAAGGGTTGTTAGGGCTTGCCCTGACCGTCTGTAAGACGCTTGATTGCATGATATGAGTATTTAGCTAGTCAAACAGTTAAAACAGCTTATATGAGCAATTAGAGGGAATCCAATAAATTCCTAAAAGCGGTTTTGATCTTTTAGCGAGTGAACGAAGTGAACGCTGCAAGTAAAATGTGAGCGTGGTTTTCGCTCACTCCTTTTTTTGATGACTTTGACCTTTGGTTTTAAATTTTTGAAAAAAATAAAAAATAGGCGAAGCCTATATTTATTTATCTTATATATTTTAATCTTTTCTTCTTTTGCGTGAAAAAAATGTCAGTGTTTATAGGCTTATCCAAATTTTTATAGCTACTAAAAACTGTGTATATAGCTACTAAAAACTGTGTATATAGCTACTAAAAACTGTGTATATAGCTACTAAAACATTGAGAAAGTAGCTATAAAATGATATAATAAAAGCATAGAGAAAATTCACGGCAAAATGACTTTCTCTATGCCTATTTCAAACACACAAAGGAGCGTATTTTAT
TGAATGTTTAGAACTTAGTAGTCGTCCAAAAACGACTACTTTTTTTGTTGAATCGTCCAAGGACGATTCGATGCTTTTGACTTGTAAGAACAGGATTGAATGAAGCCATACTGTTCGCATATTTAAGGGGATGATCAAACAAAATACGAGAGATTTTTTGTTCGTTCATCCATGGTTTTAGAAAAAAGAGGGACGATTTCGGAAGAAGAAAATCGTCTCTTTTTTTTCTTCTTTTTGTATGACAAAAAGAAAGATCTTTTGCCCATTTTTATTTTTTATAAAATGGGCAGGTGGCGTTTGCGTAAAGCAAATCGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTATATGGTCTATTTTGTTGTGAGGATTGTAACCGAATAGGGCGCAATACTTATTACAAAATCAATGACAAAGGGCGATTGAGAAATGAGCGCTGGGGCATTTTATCTTTGAGGAAGTTCTTGATGGATCAGAAAAATGTATCACAAATTTAAACAAAGACTCACTCATTTAAGAGACGCTACTAGCATGAAATTTTGTTGTTGCGATAAGCAACTTCTGATACAGGTTTTTAGGGGTTAGCACGACATCAATTTATTTGATGTGTAAGTGCGCATTGCACTCTTTTTTTACGAAACAAGCCGACCAGCGTTTGAAACTTTTTAGTTTTTCATCATTCTATTTTAAAACGTTCTAAAATTCGATTTAAGCGACTTTAATTCGAAACTGTCTATTTGTTCAAAGGGAGCATTAAAGTCGCTTAAACGAGCTTTTAAGTGGGTTTAAATTGATTTTGAATTGAATAGCTTGTTGTAAGTTGTAAAAAAAACAAGTTAAACAAAGTATCAGTTTTCCATTTAAGGGTTGTTAGGGCTTGCCCTGACCGTCTGTAAGACGCTTGATTGCATGATATGAGTATTTAGCTAGTCAAACAGTTAAAACAGCTTATATGAGCAATTAGAGGGAATCCAATAAATTCCTAAAAGCGGTTTTGATCTTTTAGCGAGTGAACGAAGTGAACGCTGCAAGTAAAATGTGAGCGTGGTTTTCGCTCACTCCTTTTTTTGATGACTTTGACCTTTGGTTTTAAATTTTTGAAAAAAATAAAAAATAGGCGAAGCCTATATTTATTTATCTTATATATTTTAATCTTTTCTTCTTTTGCGTGAAAAAAATGTCAGTGTTTATAGGCTTATCCAAATTTTTATAGCTACTAAAAACTGTGTATATAGCTACTAAAAACTGTGTATATAGCTACTAAAAACTGTGTATATAGCTACTAAAACATTGAGAAAGTAGCTATAAAATGATATAATAAAAGCATAGAGAAAATTCACGGCAAAATGACTTTCTCTATGCCTATTTCAAACACACAAAGGAGCGTATTTTAT

AT-rich region
The information of repeat sequences

Motif GTGTATATAGCTACTAAAAMM

StartP-valueSite
13341.91e-12ACTAAAAACTGTGTATATAGCTACTAAAAACTGTGTATATA
13121.91e-12ACTAAAAACTGTGTATATAGCTACTAAAAACTGTGTATATA
13564.08e-12ACTAAAAACTGTGTATATAGCTACTAAAACATTGAGAAAGT
12903.98e-10GCTTATCCAAATTTTTATAGCTACTAAAAACTGTGTATATA
10034.81e-10TGCATGATATGAGTATTTAGCTAGTCAAACAGTTAAAACAG

Motif RTCCAARRRCGA

StartP-valueSite
552.43e-08TTGTTGAATCGTCCAAGGACGATTCGATGCTT
244.19e-07CTTAGTAGTCGTCCAAAAACGACTACTTTTTT
4971.89e-06CAAAATCAATGACAAAGGGCGATTGAGAAATG
3201.89e-06AATCGACACAATCCAAAGGGGATAAAAGGGGA
3763.46e-06CCACATTGTAATACAAGAACGAAGTGCTTTGT

Motif ATGKGWARGTGGNNHTTGCNC

StartP-valueSite
2836.47e-10TTTTTATAAAATGGGCAGGTGGCGTTTGCGTAAAGCAAATC
6914.19e-09AATTTATTTGATGTGTAAGTGCGCATTGCACTCTTTTTTTA
9495.96e-09TTTTCCATTTAAGGGTTGTTAGGGCTTGCCCTGACCGTCTG
3365.96e-09AGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGC
11231.92e-08TGCAAGTAAAATGTGAGCGTGGTTTTCGCTCACTCCTTTTT

The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000007 100.0 1480 0 0 1 1480 1 1480 0.0 2734
pORI00000208 93.356 1490 63 31 1 1470 1 1474 0.0 2170
pORI00000078 93.694 1443 68 16 1 1427 1 1436 0.0 2139
pORI00000378 92.512 1429 83 23 1 1421 1 1413 0.0 2025
pORI00000507 95.982 1095 32 12 1 1090 1 1088 0.0 1768
pORI00000507 77.673 318 50 19 1162 1470 1092 1397 3.78351e-44 174
pORI00000397 94.53 585 24 7 454 1034 1535 955 0.0 896
pORI00000376 83.486 218 31 4 940 1152 495 712 0.0 198
pORI00000375 90.526 95 4 2 1066 1155 426 332 5.05e-28 121
pORI00000934 93.506 77 3 1 1077 1153 542 616 8.45e-26 113
pORI00000123 96.97 66 2 0 1088 1153 108 173 3.04e-25 111
pORI00000172 95.455 66 3 0 1088 1153 456 521 1.41e-23 106
pORI00000739 93.182 44 3 0 946 989 558 515 2.4e-11 66