DoriC

RefSeq

NC_004652

DoriC accession number

pORI00000007

OriC length

1480 nt

OriC AT content

0.6662

The location of oriC region

287..1766 nt

Browse in NCBI

OriC map

OriC sequences

TGAATGTTTAGAACTTAGTAGTCGTCCAAAAACGACTACTTTTTTTGTTGAATCGTCCAAGGACGATTCGATGCTTTTGACTTGTAAGAACAGGATTGAATGAAGCCATACTGTTCGCATATTTAAGGGGATGATCAAACAAAATACGAGAGATTTTTTGTTCGTTCATCCATGGTTTTAGAAAAAAGAGGGACGATTTCGGAAGAAGAAAATCGTCTCTTTTTTTTCTTCTTTTTGTATGACAAAAAGAAAGATCTTTTGCCCATTTTTATTTTTTATAAAATGGGCAGGTGGCGTTTGCGTAAAGCAAATCGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTATATGGTCTATTTTGTTGTGAGGATTGTAACCGAATAGGGCGCAATACTTATTACAAAATCAATGACAAAGGGCGATTGAGAAATGAGCGCTGGGGCATTTTATCTTTGAGGAAGTTCTTGATGGATCAGAAAAATGTATCACAAATTTAAACAAAGACTCACTCATTTAAGAGACGCTACTAGCATGAAATTTTGTTGTTGCGATAAGCAACTTCTGATACAGGTTTTTAGGGGTTAGCACGACATCAATTTATTTGATGTGTAAGTGCGCATTGCACTCTTTTTTTACGAAACAAGCCGACCAGCGTTTGAAACTTTTTAGTTTTTCATCATTCTATTTTAAAACGTTCTAAAATTCGATTTAAGCGACTTTAATTCGAAACTGTCTATTTGTTCAAAGGGAGCATTAAAGTCGCTTAAACGAGCTTTTAAGTGGGTTTAAATTGATTTTGAATTGAATAGCTTGTTGTAAGTTGTAAAAAAAACAAGTTAAACAAAGTATCAGTTTTCCATTTAAGGGTTGTTAGGGCTTGCCCTGACCGTCTGTAAGACGCTTGATTGCATGATATGAGTATTTAGCTAGTCAAACAGTTAAAACAGCTTATATGAGCAATTAGAGGGAATCCAATAAATTCCTAAAAGCGGTTTTGATCTTTTAGCGAGTGAACGAAGTGAACGCTGCAAGTAAAATGTGAGCGTGGTTTTCGCTCACTCCTTTTTTTGATGACTTTGACCTTTGGTTTTAAATTTTTGAAAAAAATAAAAAATAGGCGAAGCCTATATTTATTTATCTTATATATTTTAATCTTTTCTTCTTTTGCGTGAAAAAAATGTCAGTGTTTATAGGCTTATCCAAATTTTTATAGCTACTAAAAACTGTGTATATAGCTACTAAAAACTGTGTATATAGCTACTAAAAACTGTGTATATAGCTACTAAAACATTGAGAAAGTAGCTATAAAATGATATAATAAAAGCATAGAGAAAATTCACGGCAAAATGACTTTCTCTATGCCTATTTCAAACACACAAAGGAGCGTATTTTAT

AT-rich region

The information of repeat sequences

Motif GTGTATATAGCTACTAAAAMM

Start	P-value		Site
1334	1.91e-12	ACTAAAAACT	GTGTATATAGCTACTAAAAAC	TGTGTATATA
1312	1.91e-12	ACTAAAAACT	GTGTATATAGCTACTAAAAAC	TGTGTATATA
1356	4.08e-12	ACTAAAAACT	GTGTATATAGCTACTAAAACA	TTGAGAAAGT
1290	3.98e-10	GCTTATCCAA	ATTTTTATAGCTACTAAAAAC	TGTGTATATA
1003	4.81e-10	TGCATGATAT	GAGTATTTAGCTAGTCAAACA	GTTAAAACAG

Motif RTCCAARRRCGA

Start	P-value		Site
55	2.43e-08	TTGTTGAATC	GTCCAAGGACGA	TTCGATGCTT
24	4.19e-07	CTTAGTAGTC	GTCCAAAAACGA	CTACTTTTTT
497	1.89e-06	CAAAATCAAT	GACAAAGGGCGA	TTGAGAAATG
320	1.89e-06	AATCGACACA	ATCCAAAGGGGA	TAAAAGGGGA
376	3.46e-06	CCACATTGTA	ATACAAGAACGA	AGTGCTTTGT

Motif ATGKGWARGTGGNNHTTGCNC

Start	P-value		Site
283	6.47e-10	TTTTTATAAA	ATGGGCAGGTGGCGTTTGCGT	AAAGCAAATC
691	4.19e-09	AATTTATTTG	ATGTGTAAGTGCGCATTGCAC	TCTTTTTTTA
949	5.96e-09	TTTTCCATTT	AAGGGTTGTTAGGGCTTGCCC	TGACCGTCTG
336	5.96e-09	AGGGGATAAA	AGGGGAAAGTGAAACTTCCCC	CTTTTCAAGC
1123	1.92e-08	TGCAAGTAAA	ATGTGAGCGTGGTTTTCGCTC	ACTCCTTTTT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000007	100.0	1480	0	0	1	1480	1	1480	0.0	2734
pORI00000208	93.356	1490	63	31	1	1470	1	1474	0.0	2170
pORI00000078	93.694	1443	68	16	1	1427	1	1436	0.0	2139
pORI00000378	92.512	1429	83	23	1	1421	1	1413	0.0	2025
pORI00000507	95.982	1095	32	12	1	1090	1	1088	0.0	1768
pORI00000507	77.673	318	50	19	1162	1470	1092	1397	3.78351e-44	174
pORI00000397	94.53	585	24	7	454	1034	1535	955	0.0	896
pORI00000376	83.486	218	31	4	940	1152	495	712	0.0	198
pORI00000375	90.526	95	4	2	1066	1155	426	332	5.05e-28	121
pORI00000934	93.506	77	3	1	1077	1153	542	616	8.45e-26	113
pORI00000123	96.97	66	2	0	1088	1153	108	173	3.04e-25	111
pORI00000172	95.455	66	3	0	1088	1153	456	521	1.41e-23	106
pORI00000739	93.182	44	3	0	946	989	558	515	2.4e-11	66