DoriC

RefSeq

NC_017500

DoriC accession number

pORI00000532

OriC length

982 nt

OriC AT content

0.6904

The location of oriC region

75396..563 nt

Browse in NCBI

OriC map

OriC sequences

AAAAAATGGTTCTGATTCAGCAGGTTATACTTCTGCTAATCAAACCGTCTATTTATATGATGGCTCAACATTACAAATAACTTCTGCTTTTGTAAAAGACAGAACAAATAATATTTATAAAAATTTTCCTATTAGTCCGGACATTCAAACAAATAATGCTAAAAGTTCTGCAATAGAATGGATAAAATCTCAAATAAAGTAAAGTAAAAAGACTTGCCAAGAAAAACATACGGTAAGTCTTTTTTGCTAGTCAAAACTTAACAGTTTTGACCTATTTTTAGCATGCAGATGAATAATGAGGTTAGAGCAGGTCATAAATAACGGTCATAGTTAAAAGCTAAAATTGTACGTTTTAGTCAATTACATACAAGCCTATTTAAGGGCTTTTTCTTTTATCCATGATAATTATCACTAACTCACGTTTAAAACCGCTTAGAATGCAAACTATGATCTTGTAGGACTATTCAAAGTGTTTAGACTAAACAAAGTAGCCACGACCGTTAGGGAGTTCTTTTTAGTGGCAGAATGTATCTAATATAAAATCAGAATGTACAAGCGGAGCGACAAGAGCAACGCAGGGAGTTTAAATTTAGAACTTCAATTCAATGGTTTTGACTTTTTCTTTTGACCTTGATTTTAATTTTTGAAAAAAATAAAAAAAGGCGAAGCCTATATTAATTTATCATATATATTTTAATCTTTTGTTCTTTTGCGTGGAAAAAAATCCGGTGTTTACAAGGGAATGCAGATTTTTATCACTACAAAAAGCGATGTATATCACTACAAAAAGCGATGTATATCACTACAAAAAGCGATGCATATCACTACAAAAAGCGATGTATATCACTACAAAAAGCGATGCATATCACTACAAAGTATTGTATATGTAGTGATTAAGTGGTATAATGAAAGCATAGAGAATACAGACCGCAAAATCAGTTTCTCTATGCTTAACCAAAATTACTCACAAAGGAGTATTTCT

AT-rich region

The information of repeat sequences

Motif TATCACTACAAAAAGCGATGY

Start	P-value		Site
842	4.67e-13	AAGCGATGTA	TATCACTACAAAAAGCGATGC	ATATCACTAC
798	4.67e-13	AAGCGATGTA	TATCACTACAAAAAGCGATGC	ATATCACTAC
820	1.42e-12	AAGCGATGCA	TATCACTACAAAAAGCGATGT	ATATCACTAC
776	1.42e-12	AAGCGATGTA	TATCACTACAAAAAGCGATGT	ATATCACTAC
754	1.42e-12	TGCAGATTTT	TATCACTACAAAAAGCGATGT	ATATCACTAC

Motif ATTYAABRGKTTTKACTTWTDYTWATSA

Start	P-value		Site
601	7.77e-13	TAGAACTTCA	ATTCAATGGTTTTGACTTTTTCTTTTGA	CCTTGATTTT
15	9.21e-12	AATGGTTCTG	ATTCAGCAGGTTATACTTCTGCTAATCA	AACCGTCTAT
256	1.45e-11	GCTAGTCAAA	ACTTAACAGTTTTGACCTATTTTTAGCA	TGCAGATGAA
375	2.83e-11	ATACAAGCCT	ATTTAAGGGCTTTTTCTTTTATCCATGA	TAATTATCAC

Motif GTTCKTTTTAGTS

Start	P-value		Site
508	7.94e-08	CCGTTAGGGA	GTTCTTTTTAGTG	GCAGAATGTA
704	1.68e-07	TTAATCTTTT	GTTCTTTTGCGTG	GAAAAAAATC
346	3.60e-07	AGCTAAAATT	GTACGTTTTAGTC	AATTACATAC
125	1.50e-06	TTATAAAAAT	TTTCCTATTAGTC	CGGACATTCA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000532	100.0	982	0	0	1	982	1	982	0.0	1814
pORI00000532	96.429	84	3	0	792	875	748	831	9.18e-34	139
pORI00000532	96.429	84	3	0	748	831	792	875	9.18e-34	139
pORI00000532	98.214	56	1	0	820	875	754	809	1.56e-21	99
pORI00000532	98.214	56	1	0	754	809	820	875	1.56e-21	99
pORI00000849	100.0	780	0	0	203	982	1	780	0.0	1441
pORI00000849	96.429	84	3	0	792	875	546	629	9.18e-34	139
pORI00000849	96.429	84	3	0	748	831	590	673	9.18e-34	139
pORI00000849	98.214	56	1	0	820	875	552	607	1.56e-21	99
pORI00000849	98.214	56	1	0	754	809	618	673	1.56e-21	99
pORI00000408	100.0	780	0	0	203	982	1	780	0.0	1441
pORI00000408	96.429	84	3	0	792	875	546	629	9.18e-34	139
pORI00000408	96.429	84	3	0	748	831	590	673	9.18e-34	139
pORI00000408	98.214	56	1	0	820	875	552	607	1.56e-21	99
pORI00000408	98.214	56	1	0	754	809	618	673	1.56e-21	99
pORI00000349	90.256	585	43	13	251	828	766	1343	0.0	752
pORI00000113	94.82	444	19	4	276	717	231	672	0.0	689
pORI00000847	90.741	378	27	7	379	752	22	395	0.0	497
pORI00000507	85.648	216	28	3	607	821	1075	1288	0.0	224
pORI00000378	84.259	216	20	13	624	831	1156	1365	0.0	198
pORI00000797	90.226	133	10	3	623	752	318	186	3.26503e-43	171
pORI00000790	93.913	115	4	3	623	734	1205	1319	3.26503e-43	171
pORI00000208	81.951	205	26	11	624	821	1165	1365	5.44993e-41	163
pORI00000397	87.681	138	14	3	610	744	334	197	2.53e-39	158
pORI00000397	94.444	36	2	0	940	975	44	9	9.51e-09	57
pORI00000848	89.216	102	8	3	635	735	305	206	2.57e-29	124
pORI00000260	89.552	67	4	3	652	715	203	269	1.57e-16	82
pORI00000982	75.882	170	34	4	657	822	285	119	5.64e-16	81