RefSeq NC_004947
DoriC accession number pORI00000376
OriC length 1028 nt
OriC AT content 0.6625
The location of oriC region 4167..802 nt
Browse in NCBI
OriC map
OriC sequences
ATCTTATACGTGTCTAAAAGCTAATAAGAATATGTAGATGACCCACTACAAACTTTTTTTTCGAGGAGGCGACTAGATGAAAAAAAGAATTAAAAAAAAGAAATTCAAAAAAAAGATAATTGGCCTATCAGATAAAAAAACAGACATATTGGTTAAAATTCCTAATAAAAAAAGCTTAAAAACCAAGTAGGCTGCTACATTGTTTTTTTTTGTTTCCAAAGTCGACGTCAACTTCAGATAAAGGATTTTTAGCCCTTACACCTGGCGTATAGGGTGGCTATTTGCCTATGCAACCCGATAGGGGAACTAGTACAAACAATACTATATCATTTAAAACGCTCTATCGTTCGATTTAAGCGACTTTAAACCAAAGATGTACTTTTTATCGAACAAACTAATAAAACGCCTTAATCGACGCTCTAGACGTGCTGAAATTGATTTTAACTCAAATAAGTAATTAATGGTGTTGAAAAGAAATTGATGAAATCTTAGGCTTTACTTTTAAGGGTTGTTAGGGCTTGCCCTGACCGCCTGTAAGGCGCCTGACTGCAAGTCATGAATGTTTATCTAGTTAATCACTTAAAACAACTGATACGTGCAAATAGAGCCAATCAAGGAACTCCCTAAAAGAGGGTTTGGTCTTTTCTTTTAGCGAGTGAACGAAGTGAACGCTGCAAGTAAAATGTGAGCGTGATTTTCGCTCACTCCTTTTAGTTTGTGTTTTGTTTTTTTAGAATAGAAAAACAAAACACACGCCTACGCGCGCTTTTATATTTATATAATATTTTTTAAATACTTTATAATACTTAGGGGAATGAGAATGGCTTAGTACCAACGTTTACGAGCATAACGTGCCAGTAAAAAGTACATAACGTGCCAGTAAAAAGTACATGACGTGCCAGTAAAAAGTACATGACGTGCCAGTAAAAAGTACATGACGTGCCAGTCTATTTTATTTTGAATTTGATTTTTAAGTCATTTTAAAATATAATGTCATTATGTTTTAAACTCATCTGTTTGAAAGGAAA
ATCTTATACGTGTCTAAAAGCTAATAAGAATATGTAGATGACCCACTACAAACTTTTTTTTCGAGGAGGCGACTAGATGAAAAAAAGAATTAAAAAAAAGAAATTCAAAAAAAAGATAATTGGCCTATCAGATAAAAAAACAGACATATTGGTTAAAATTCCTAATAAAAAAAGCTTAAAAACCAAGTAGGCTGCTACATTGTTTTTTTTTGTTTCCAAAGTCGACGTCAACTTCAGATAAAGGATTTTTAGCCCTTACACCTGGCGTATAGGGTGGCTATTTGCCTATGCAACCCGATAGGGGAACTAGTACAAACAATACTATATCATTTAAAACGCTCTATCGTTCGATTTAAGCGACTTTAAACCAAAGATGTACTTTTTATCGAACAAACTAATAAAACGCCTTAATCGACGCTCTAGACGTGCTGAAATTGATTTTAACTCAAATAAGTAATTAATGGTGTTGAAAAGAAATTGATGAAATCTTAGGCTTTACTTTTAAGGGTTGTTAGGGCTTGCCCTGACCGCCTGTAAGGCGCCTGACTGCAAGTCATGAATGTTTATCTAGTTAATCACTTAAAACAACTGATACGTGCAAATAGAGCCAATCAAGGAACTCCCTAAAAGAGGGTTTGGTCTTTTCTTTTAGCGAGTGAACGAAGTGAACGCTGCAAGTAAAATGTGAGCGTGATTTTCGCTCACTCCTTTTAGTTTGTGTTTTGTTTTTTTAGAATAGAAAAACAAAACACACGCCTACGCGCGCTTTTATATTTATATAATATTTTTTAAATACTTTATAATACTTAGGGGAATGAGAATGGCTTAGTACCAACGTTTACGAGCATAACGTGCCAGTAAAAAGTACATAACGTGCCAGTAAAAAGTACATGACGTGCCAGTAAAAAGTACATGACGTGCCAGTAAAAAGTACATGACGTGCCAGTCTATTTTATTTTGAATTTGATTTTTAAGTCATTTTAAAATATAATGTCATTATGTTTTAAACTCATCTGTTTGAAAGGAAA
AT-rich region
The information of repeat sequences

Motif AAGTACATRACGTGCCAGTA

StartP-valueSite
9077.27e-13TGCCAGTAAAAAGTACATGACGTGCCAGTAAAAAGTACAT
8857.27e-13TGCCAGTAAAAAGTACATGACGTGCCAGTAAAAAGTACAT
9291.39e-12TGCCAGTAAAAAGTACATGACGTGCCAGTCTATTTTATTT
8633.20e-12TGCCAGTAAAAAGTACATAACGTGCCAGTAAAAAGTACAT
8411.47e-11ACCAACGTTTACGAGCATAACGTGCCAGTAAAAAGTACAT

Motif TTAGBCYTTDCHYTTAVCG

StartP-valueSite
2498.49e-10TAAAGGATTTTTAGCCCTTACACCTGGCGTATAGGGTGG
5121.02e-09TTAAGGGTTGTTAGGGCTTGCCCTGACCGCCTGTAAGGC
6363.69e-09AAAAGAGGGTTTGGTCTTTTCTTTTAGCGAGTGAACGAA
4895.51e-09TGATGAAATCTTAGGCTTTACTTTTAAGGGTTGTTAGGG

Motif ARRCGMCT

StartP-valueSite
5372.52e-06ACCGCCTGTAAGGCGCCTGACTGCAAGT
672.04e-05TTTTTCGAGGAGGCGACTAGATGAAAAA
7512.50e-05AAAACAAAACACACGCCTACGCGCGCTT
4013.50e-05CAAACTAATAAAACGCCTTAATCGACGC
3555.11e-05CGTTCGATTTAAGCGACTTTAAACCAAA
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000376 100.0 1028 0 0 1 1028 1 1028 0.0 1899
pORI00000376 96.552 58 2 0 890 947 846 903 5.87e-21 97
pORI00000376 96.552 58 2 0 846 903 890 947 5.87e-21 97
pORI00000208 85.321 218 32 0 495 712 938 1155 0.0 226
pORI00000375 84.167 240 26 7 623 850 424 185 0.0 222
pORI00000078 84.615 221 34 0 492 712 941 1161 0.0 220
pORI00000007 83.486 218 31 4 495 712 940 1152 0.0 198
pORI00000378 81.193 218 32 1 495 712 938 1146 4.40989e-42 167
pORI00000934 91.765 85 5 2 635 718 539 622 4.51e-27 117
pORI00000123 98.462 65 1 0 648 712 108 172 1.62e-26 115
pORI00000172 96.923 65 2 0 648 712 456 520 7.54e-25 110
pORI00000507 78.616 159 34 0 492 650 936 1094 9.76e-24 106
pORI00000397 85.057 87 13 0 501 587 1043 957 9.83e-19 90
pORI00000922 97.674 43 0 1 500 542 113 154 9.9e-14 73
pORI00000739 97.619 42 1 0 501 542 558 517 9.9e-14 73
pORI00000597 97.674 43 0 1 500 542 305 346 9.9e-14 73
pORI00001003 100.0 37 0 0 506 542 565 529 1.28e-12 69
pORI00000887 100.0 37 0 0 506 542 606 642 1.28e-12 69
pORI00000738 100.0 37 0 0 506 542 883 919 1.28e-12 69