DoriC

RefSeq

NC_015860

DoriC accession number

pORI00000507

OriC length

1405 nt

OriC AT content

0.6705

The location of oriC region

5305..327 nt

Browse in NCBI

OriC map

OriC sequences

TGAATGTTTAGAACTTAGTAGTCGTCCAAAAACGACTACTTTTTTTGTTGAATCGTCCTTGGACGATTCAATGCTTTTGACTTGTAAGAACAGGATTGAATGAAGCCATACTGTTCGCATATTTTTAGTGGATGAACAAATAAAATACGAGAGATTTTTTGTTTGTTCATCCATGGTTTTAGAAAAAAGAGGGACGATTTCGGAAGAAGAAAATCGTCTCTTTTTTTTCTTCTTTTTGTATGACAAAAAGAAAGATCTTTTGCCCATTTTATTTTTATAAAATGGGTAGGTGGCGTTTGCGTAAAGCAAATCGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTATATGGTCTATTTTGTTGTGAGGATTGTAACCGAATAGGGCGCAATACTTATTACAAAATCAATGACAAAGGGCGATTGAGAAATGAGCGCTGGGGCATTTTATATTTGAGTAAGTTATTGATGGATCAGAAAAATGTATCACAAATTTAAACAAAGACTCACTCATTTAAGAGACGCTACTAGCATGAAATTTTGTTGTTGCGATAAGCAACTTCTGATACACGATTTTTAGCCATTACATCACTCGTTTTTAGAGTGATGTGTAAGTGCGCATTGCACTCTTTTTTAACGAAACAAGCCGACCAGCGTTTGAAACTTTTTAGTTTTTCATCATTCTATTTTAAAACGGTCTAAAACTCGATTTAAGCGACTTTAATTCGAGACTGTCTCTTTGTTCAAAGGGAGCATTAAGAATGCTTAAACGAGCTTTTAAGTGGGTTTAAATTGATTTTGAGTTGAATAGCTTGTTGTAAGTTGTAAAAAAACAAGTTAAACAAAGTATCGGTTTTCCATTTAAGGGTTGTTAGGGCTTGCCCTGACCGTCTGTAAGACGCTTGATTGAATGATATGAGTATTTAGCTAGTCAAACAGTTAAAACAGCTTATATGAGCAATTAGAGGGAATCCAATAAATTCCTAAAAGTGGTTTTGACTTTTTCTTTTGACCTTGATTTTAATTTTTGAAAAAAATAAAAAAGGCGAAGCCTATTACTATTTATCTTATATATTTTAATCTTTTGTTCTTTTGCGTGAAAAAAAAGTCAGTGTTTTCAAGTACATGCAGAATTTAACCGATAGAAAAATCGATGTATACCGATAGAAAAATCGATGTATACCGATAGAAAAATCGATGTATACCGATAGAATTTATTGGAATACTATCGGTATTTTGATATAATAAAAGCATAGAGAAAATTCACGACTAAATGACTTCTCTATGCTCACTATAAAACACTCACAAAGGAGTATTCACT

AT-rich region

The information of repeat sequences

Motif ACCGATAGAAAAATCGATGTA

Start	P-value		Site
1266	7.46e-13	ATCGATGTAT	ACCGATAGAAAAATCGATGTA	TACCGATAGA
1244	7.46e-13	ATCGATGTAT	ACCGATAGAAAAATCGATGTA	TACCGATAGA
1222	7.46e-13	GCAGAATTTA	ACCGATAGAAAAATCGATGTA	TACCGATAGA
777	6.25e-11	TCTATTTTAA	AACGGTCTAAAACTCGATTTA	AGCGACTTTA

Motif CGAHWCAAKSC

Start	P-value		Site
312	4.42e-08	TAAAGCAAAT	CGACACAATCC	AAAGGGGATA
722	4.04e-07	TCTTTTTTAA	CGAAACAAGCC	GACCAGCGTT
64	1.77e-06	CGTCCTTGGA	CGATTCAATGC	TTTTGACTTG

Motif SSCWTKHCAWSACHSDTTKTWAKAS

Start	P-value		Site
960	4.31e-13	GGGTTGTTAG	GGCTTGCCCTGACCGTCTGTAAGAC	GCTTGATTGA
354	1.24e-11	TGAAACTTCC	CCCTTTTCAAGCCACATTGTAATAC	AAGAACGAAG
664	4.31e-11	ACGATTTTTA	GCCATTACATCACTCGTTTTTAGAG	TGATGTGTAA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000507	100.0	1405	0	0	1	1405	1	1405	0.0	2595
pORI00000507	100.0	32	0	0	1266	1297	1222	1253	1.06e-09	60
pORI00000507	100.0	32	0	0	1222	1253	1266	1297	1.06e-09	60
pORI00000378	97.263	1096	25	5	1	1094	1	1093	0.0	1853
pORI00000378	85.385	260	31	7	1092	1346	1156	1413	0.0	263
pORI00000078	96.906	1099	29	4	1	1094	1	1099	0.0	1836
pORI00000078	79.121	273	45	11	1091	1354	1169	1438	2.8026e-45	178
pORI00000208	96.354	1097	33	7	1	1094	1	1093	0.0	1797
pORI00000208	83.492	315	42	9	1092	1399	1165	1476	0.0	285
pORI00000007	95.982	1095	32	12	1	1088	1	1090	0.0	1768
pORI00000007	77.532	316	54	15	1092	1397	1162	1470	3.64338e-44	174
pORI00000397	96.392	582	19	2	453	1033	1535	955	0.0	957
pORI00000397	79.783	277	45	11	1078	1346	334	61	0.0	191
pORI00000349	85.211	284	28	12	1075	1351	1122	1398	0.0	279
pORI00000797	81.62	321	43	15	1091	1401	318	4	0.0	252
pORI00000849	85.648	216	28	3	1075	1288	405	619	0.0	224
pORI00000532	85.648	216	28	3	1075	1288	607	821	0.0	224
pORI00000408	85.648	216	28	3	1075	1288	405	619	0.0	224
pORI00000847	94.03	134	5	3	1075	1206	250	382	0.0	200
pORI00000790	79.375	320	30	21	1091	1401	1205	1497	0.0	193
pORI00000848	77.023	309	44	24	1103	1397	305	10	1.7e-37	152
pORI00000260	76.718	262	46	13	1120	1373	207	461	2.21e-31	132
pORI00000376	78.616	159	34	0	936	1094	492	650	1.34e-23	106
pORI00000982	90.625	64	4	2	1120	1182	288	226	6.28e-17	84
pORI00000739	93.182	44	3	0	945	988	558	515	2.28e-11	66