DoriC

RefSeq

NZ_CP014631

DoriC accession number

pORI00000790

OriC length

1500 nt

OriC AT content

0.6753

The location of oriC region

10450..11949 nt

Browse in NCBI

OriC map

OriC sequences

GTAAATAGGCCTCCAAAATTTAATACAGTTCCAAATATATAATTGGTCTGTGGCCCCCTGTCAATAAAATATACAATTTAAATGGTAGATTGTAAAATTTAAGTTGAACATATTAGTGGACAGAAAAACCCATAAAGGTCTTTAATGGTGTCACCACAACATTCCACTAGAAAGAAGGACCTTTATGGGCACTACTATTTTATCATTTGATGGATTGAAGTCAATATTTGGTTTGGATTGGTTTTTGATTCGAATATCAATTTTAGATTCTTAAAAATTGAATGAGAATGCTTTTTGACTTTGAACTTATTTTGAAAAAATAAGTTCAAAGTGCACTCGATTTTCGAGTTAAAATTGCTAACAAGACCGACAAGGTCGAAGCGTAAAATTTAAACTCTAACTTGCTGATTTTTTAAATTTAATCGAGTCCAAAGACGAAGAAAATTTAAAAAGCAAGTGCATTTGATCTTGAACTTGTGAGCAATTTTTCGAAGAAAAAAGTTGCGAGAATGACCAACTAAAGTTGGGAATGGTTGCTCTCTGCAGGAGCCCGTTTTCGATAGTTTGCTCACGCAGTGACAAACTAATAGAGGGTTATTAACTTGACACAAATTAAATTATTGAAAGTAATCAAAAAGCTAATTCTAATCAAAAAGAAATTAGACGAGTTAGGTCACCCCGAGTAAAGATTACTCCTGTATCCAATAATCAAAAGTAGAAGCATGGAATGAGCAGATAAACGCGTCTCAGAAGCTCATATTTGCGTTCTAAGGTGTTTTAGATGATTTTGCATATATTTATATATAAAACAATTTAAAAGGCCCTCTAAAATAACTTTAGAGGGCCTTTTTCATATGCAGATATCAACAACAATCACGATGTAGAAATCTAACTTAATTATGACTACTAGAAACGACCTGTTCTCAGTGCCTCTGTAACGCTATCTTTATTTCTTAGACACAACTGTTAAGTTACGGCACTATGTAGCCAGTTCCTCAAACCAAAGCCCCGCAGGCACCATGTGCCGAGGAATTTCCTATGATTTAGGAAAAAAACAATTCTTTAAAGGAATTGATGCGAGTTATTATTACGAGGGCTATTACGAAATTAAAACAGAAGATCTATAAACACGTATAAACACGATTTAAAGAAACAGACTGCTCAATATAAAACTTGAGCAGTCTGTCTCTTTTTTTTTGGATGATTTTGACCTTTGATTTTAAATTTTTGAAAAAAATAAAAAAAGGCGAAGCCTATATTACATTTATCTTATATATTTTAATCTTTTGTTCTTTTGCGTGAAAAAAAAGCCAGTGTTTCCAGTCGTATGCAGAATTAAACAGTCAGAAAAAACTGTTTATACAGTCAGGAAAAACTGTTTATACAGTCAGAAAAAATTGAACAACTGACTGTATTTTGATAGAATAAAAGCATAGAGAAATACCCGACTAAAAGTCTTTCTCTATGCCTACTTAAAATCACTCACAAAGGAGTATTTCC

AT-rich region

The information of repeat sequences

Motif RCAGWCAGAAAAAMCYG

Start	P-value		Site
1340	9.43e-10	GCAGAATTAA	ACAGTCAGAAAAAACTG	TTTATACAGT
1362	2.33e-09	AACTGTTTAT	ACAGTCAGGAAAAACTG	TTTATACAGT
1384	1.42e-08	AACTGTTTAT	ACAGTCAGAAAAAATTG	AACAACTGAC
1431	9.41e-08	TAGAATAAAA	GCATAGAGAAATACCCG	ACTAAAAGTC
116	1.05e-07	GAACATATTA	GTGGACAGAAAAACCCA	TAAAGGTCTT

Motif TCTSWRKSMCYMYGT

Start	P-value		Site
47	7.64e-10	ATATAATTGG	TCTGTGGCCCCCTGT	CAATAAAATA
922	1.62e-08	AACGACCTGT	TCTCAGTGCCTCTGT	AACGCTATCT
540	1.56e-07	ATGGTTGCTC	TCTGCAGGAGCCCGT	TTTCGATAGT
1009	2.42e-07	AACCAAAGCC	CCGCAGGCACCATGT	GCCGAGGAAT
1460	8.36e-07	TAAAAGTCTT	TCTCTATGCCTACTT	AAAATCACTC

Motif GTTWGSTCACSCMGWG

Start	P-value		Site
668	2.55e-10	AATTAGACGA	GTTAGGTCACCCCGAG	TAAAGATTAC
563	3.80e-10	GTTTTCGATA	GTTTGCTCACGCAGTG	ACAAACTAAT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000790	100.0	1500	0	0	1	1500	1	1500	0.0	2771
pORI00000797	98.555	1522	0	1	1	1500	1522	1	0.0	2669
pORI00000349	86.667	195	18	6	1205	1396	1138	1327	0.0	209
pORI00000208	79.697	330	36	21	1192	1495	1152	1476	0.0	209
pORI00000378	94.737	133	4	3	1187	1319	1139	1268	0.0	204
pORI00000507	79.31	319	32	19	1205	1497	1091	1401	0.0	193
pORI00000849	93.913	115	4	3	1205	1319	421	532	5.01665e-43	171
pORI00000532	93.913	115	4	3	1205	1319	623	734	5.01665e-43	171
pORI00000408	93.913	115	4	3	1205	1319	421	532	5.01665e-43	171
pORI00000848	78.361	305	31	25	1217	1493	307	10	2.32994e-41	165
pORI00000847	83.516	182	18	11	1205	1382	266	439	1.08e-39	159
pORI00000397	80.296	203	26	14	1205	1400	321	126	3.93e-34	141
pORI00000260	89.552	67	5	2	1236	1300	203	269	6.71e-17	84
pORI00000982	90.0	60	6	0	1241	1300	285	226	3.12e-15	79