DoriC

RefSeq

NC_000906

DoriC accession number

pORI00000349

OriC length

1404 nt

OriC AT content

0.7244

The location of oriC region

2069..3472 nt

Browse in NCBI

OriC map

OriC sequences

CCATTTTTATATGGATATTTTTCCAATTAAGAATCAATATAAATTTCTTTCAAAAAATAATTCTGATGTTGCAAATTCAGACGTTATTATGAAAAAAAGAGATTGAGCTTGGAATAAAATAAAAAAGAACAAAAAACTACTAAACAAGATAAGTTTAGCAGTTTTTTTATAAGTTCAAATAAGAATTATTGTTGTTTCTGATAATATTCATTCATTACTAATTGTACTAAGACAAAGTTTTTCGTTGAATGAGCATACTCTAGTTCTGACGTTAAGTCAAGTTTTTAGAGTAACAAACGTAGAATTTTAATCTATTTAGTATGGTTATTAAAGTAGGCTTCAACATTATTATCTTTTCCAGTCCTAAGAGCTTGCTTTGCTAAAATGATCATAATATATATCATACTATTTGTAACACATACCATATCTATTAAGCCGTCATATAAAGAATAAATAATTAAAGTAGCAAGGAAAAATACATTTGATTGTTCTAATCAACAAATTTTTTTTAATCTCTTTTTTGAGTTGCAATAATGATATCAGTTTTGCGTGGACTATTATCAAATAATTAGACATAAAAAAGAAAAGCGTTAATAATTGTTTTTCTTTTTTTATATTGTGTTCAGAAAATGGTCATTTTCTGAACACCCTTCTTTTCTTATTAAGATTATTAAAATCATTTGTATTTATTGTTCATTAAGCCGTAATTTATTCTATGTTCATTTATATAAGTGCTTTCAAGTTATGTACAAACGAAAAACCAGCTCACAACTTAACAGTTTTGACCTATTTTTAGCATGCAGATGAATAGTGAGGTTAGAGCAGGTCATAAATAACGGTCATATTTAAAAGCTAAAATTTTACGTTTTAGTCAATCACATACAAGCCTATTTAAGGGCTTTTTCTTTTATCCATGATAATTATTACTAACTCACGTTTAAAATCGCTTAGAAAGCAAAATATGAGCTTATAGGACTGCTCAAAGTGTTTCATTCCTACAAAGTAGCCACGACCGTTAGGGAGTTCTTTTTAGTGGCAGAATGTATCTAATATAAAATCAGAGTGTACAAGCGGAGCGACAAGAGCAACGCAGGGAGTTAAAATTTAGAACCTCAATTCAATGGTTTTGACTTTTTCTTTTGACCTTGATTTTAAATTTTTGAAAAAAATAAAAAAAGGCGAAGCCTATTATTATTTATCCTATATATTTTAATCTTTTGTTCTTTTGCGTGAAAAAAAAGTCAGTGTTTTCGCTAGTTATAGAAATTAAACAGTCACAAAAATCGATGTATACAGTCACAAAAATCGATGTATACAGTCACAAAAATCGATGTATACAGTACGACTTTTGTATTTGTGTACTGTATATAGTATAATAAAAGCATAGAGAAAACTCACTACGAA

AT-rich region

The information of repeat sequences

Motif AGTMACAAAARTCGAWGTATA

Start	P-value		Site
1317	4.50e-12	CGATGTATAC	AGTCACAAAAATCGATGTATA	CAGTACGACT
1295	4.50e-12	CGATGTATAC	AGTCACAAAAATCGATGTATA	CAGTCACAAA
1273	4.50e-12	GAAATTAAAC	AGTCACAAAAATCGATGTATA	CAGTCACAAA
1168	4.20e-09	TTTTGAAAAA	AATAAAAAAAGGCGAAGCCTA	TTATTATTTA
289	5.45e-09	AAGTTTTTAG	AGTAACAAACGTAGAATTTTA	ATCTATTTAG

Motif AYGAGCWTAWWGNAGKKC

Start	P-value		Site
962	4.45e-09	AAAGCAAAAT	ATGAGCTTATAGGACTGC	TCAAAGTGTT
811	1.36e-08	CAGATGAATA	GTGAGGTTAGAGCAGGTC	ATAAATAACG
1009	3.26e-08	CAAAGTAGCC	ACGACCGTTAGGGAGTTC	TTTTTAGTGG
249	6.95e-08	TTTTCGTTGA	ATGAGCATACTCTAGTTC	TGACGTTAAG
882	1.69e-07	TCAATCACAT	ACAAGCCTATTTAAGGGC	TTTTTCTTTT

Motif TTTTKMGTKGM

Start	P-value		Site
544	1.66e-07	ATGATATCAG	TTTTGCGTGGA	CTATTATCAA
1027	2.48e-06	TAGGGAGTTC	TTTTTAGTGGC	AGAATGTATC
519	2.48e-06	TTAATCTCTT	TTTTGAGTTGC	AATAATGATA
1224	2.79e-06	TCTTTTGTTC	TTTTGCGTGAA	AAAAAAGTCA
238	5.24e-06	TAAGACAAAG	TTTTTCGTTGA	ATGAGCATAC

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000349	100.0	1404	0	0	1	1404	1	1404	0.0	2593
pORI00000849	90.256	585	43	13	766	1343	49	626	0.0	752
pORI00000532	90.256	585	43	13	766	1343	251	828	0.0	752
pORI00000408	90.256	585	43	13	766	1343	49	626	0.0	752
pORI00000113	93.258	445	23	7	791	1232	231	671	0.0	649
pORI00000847	90.556	360	27	7	894	1250	22	377	0.0	470
pORI00000507	85.211	284	28	12	1122	1398	1075	1351	0.0	279
pORI00000378	89.552	201	18	3	1139	1337	1156	1355	0.0	252
pORI00000208	82.197	264	31	15	1139	1392	1165	1422	0.0	213
pORI00000797	81.455	275	33	16	1138	1400	318	50	0.0	209
pORI00000790	86.735	196	16	8	1138	1327	1205	1396	0.0	209
pORI00000397	88.55	131	11	4	1125	1252	334	205	1.31e-38	156
pORI00000848	88.235	102	11	1	1149	1250	307	207	4.79e-28	121
pORI00000982	75.877	228	43	9	1173	1392	285	62	1.34e-23	106
pORI00000260	91.045	67	3	3	1168	1231	203	269	4.85e-18	88