DoriC

RefSeq

NZ_CP023426

DoriC accession number

pORI00001003

OriC length

1446 nt

OriC AT content

0.6321

The location of oriC region

3068..4513 nt

Browse in NCBI

OriC map

OriC sequences

TCCTTTCTTCCCCCCTTACAAATAAATAATAACCTTTAACAACCAACTCGTAAATAGGTTGGTTGTTATTATACAAAAGGATATTAGTACTCAGATAAAAAGTTGTTAGTACTCAGATAAAAAGTTGTTAGTACTCAGATAAAAAGTTGTTAGTACTCAGATAAAAAGTTGTTAGTACCCTTCTGTATCCGTTGGGAGAGTAAGGCTCAACTGCCCCCTAAAAAGGGTTCTAAAAAATCTTTAAAAAATAAATAAAATAAACGCGCGCGCGCGAGCAAAATTTCCCGCCAAAAAATCACCCACTTTTTAAAATAAACAGGTTCGCGCATGATATTAAACTGCCAATCTAGCTCCCTATGGTCGCTGTAAGAAGGAGTGATCGCTACGCTCTCACATTTTACTTGCAGCAGTCGCCTTTAGGCTCCTTCGCCAAAAATAATTCATTAGGGACTCCTTTGTGGCGTCCTGAGAGCTCGTCTAAGCCGTTCTAAGACAAGATTCGATAAAAACTATGTCCTTCGTTCTAAAGCGCCTTACAGGCGGTCAGGGCAAGCCCTAACAACCCCAAGGCAATAAAAAACTTAGGCTTATTTTTGCTTTTTTATTGTATAATTGATTGTCGCCTATCCGACAGTCTTGCGACTGGAAGGAGGTGTGTTTCGTGTTCACTAACTTTATTTGCTCCCTTCTTGTTGGGCTTTTAAGCGCTTTGTTCAGTTACTGGTTGAATAACCGAAACAAGAAGTAAAACTTAATTAAGGCGACTCAGCCCACAAAAAAAGCCCCAGAGAATCCGACCTCTCTGGGGATTTCGTGTGTTTCGTGTTCACTTATTTGCAATCAAATTATAACAGAAATAAATATTTATTTCAAAAATATCCTACAAAAGTCTAAAATCCGTAATTATTTCTTATATGCAACATTTACAAATAAAGTCGCTCTGAGAGCTCGTATTTTTCGATTTAAGACGTTTTATTTAGTTTTTGGTGTATTTCATTGGTCCAAGCTAAAAAACTCTTAGAAGCGATTTTAGAGCCATTTAAACCCACTTAATTATATTCTCCATGAAATTCGCTCCATGCGTCAAAAGCTGCGTCTGAAATTCCGCCGTCTTCGTTCACTAGTTGCATTAATTTTTCCAACGATCGTTTTCTTTCGGGTGTCATATTTTTATATTCCAACAATTTTTCGTCTGTTAAATTTGGTTATCGATTACACGTGCAGCACTCCCCCCGAATTTTAAAGAGCATAAGGAAACGTGTACCCACTTTCTAAAAAAAGTGGGTAGATAGGCTGTGCCTATCACGTTTCTCAGAAAAAAATTTGATATCACTTTTTCGCCATCGTGGGTAGCTTATGTATAGCATTTTGGCAAAAAACAGCTATACAAATATAGTATTTGTATGGTATACATAAATTATACATAATTGCAAAAGGAGATTTTTT

AT-rich region

The information of repeat sequences

Motif CAGATAAAAAGTTGTTAGTAC

Start	P-value		Site
158	9.75e-13	TGTTAGTACT	CAGATAAAAAGTTGTTAGTAC	CCTTCTGTAT
136	9.75e-13	TGTTAGTACT	CAGATAAAAAGTTGTTAGTAC	TCAGATAAAA
114	9.75e-13	TGTTAGTACT	CAGATAAAAAGTTGTTAGTAC	TCAGATAAAA
92	9.75e-13	TATTAGTACT	CAGATAAAAAGTTGTTAGTAC	TCAGATAAAA
1313	8.03e-11	TCACGTTTCT	CAGAAAAAAATTTGATATCAC	TTTTTCGCCA

Motif AABGCGCNHCAGSCVNCAAAADHDGSCBCTRAAAAHYC

Start	P-value		Site
758	1.39e-15	AAACTTAATT	AAGGCGACTCAGCCCACAAAAAAAGCCCCAGAGAATCC	GACCTCTCTG
1069	7.49e-14	TTCTCCATGA	AATTCGCTCCATGCGTCAAAAGCTGCGTCTGAAATTCC	GCCGTCTTCG
260	1.22e-13	AAATAAAATA	AACGCGCGCGCGCGAGCAAAATTTCCCGCCAAAAAATC	ACCCACTTTT
202	1.22e-13	TTGGGAGAGT	AAGGCTCAACTGCCCCCTAAAAAGGGTTCTAAAAAATC	TTTAAAAAAT
528	3.67e-13	TTCGTTCTAA	AGCGCCTTACAGGCGGTCAGGGCAAGCCCTAACAACCC	CAAGGCAATA

Motif CTGDRAGNWSGTGTGWTYCGTDYTMASWCA

Start	P-value		Site
643	1.80e-14	AGTCTTGCGA	CTGGAAGGAGGTGTGTTTCGTGTTCACTAA	CTTTATTTGC
466	1.55e-12	TTGTGGCGTC	CTGAGAGCTCGTCTAAGCCGTTCTAAGACA	AGATTCGATA
804	2.71e-12	CCGACCTCTC	TGGGGATTTCGTGTGTTTCGTGTTCACTTA	TTTGCAATCA
941	9.44e-12	TAAAGTCGCT	CTGAGAGCTCGTATTTTTCGATTTAAGACG	TTTTATTTAG
364	1.37e-10	CCTATGGTCG	CTGTAAGAAGGAGTGATCGCTACGCTCTCA	CATTTTACTT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00001003	100.0	1446	0	0	1	1446	1	1446	0.0	2671
pORI00001003	93.75	64	2	2	117	178	71	134	2.99e-20	95
pORI00001003	93.75	64	2	2	71	134	117	178	2.99e-20	95
pORI00001003	90.476	42	2	2	139	178	71	112	5.07e-08	55
pORI00001003	90.476	42	2	2	71	112	139	178	5.07e-08	55
pORI00000738	98.434	1469	0	2	1	1446	1469	1	0.0	2564
pORI00000738	100.0	51	0	0	84	134	1320	1270	2.99e-20	95
pORI00000738	100.0	51	0	0	128	178	1386	1336	2.99e-20	95
pORI00000738	100.0	29	0	0	84	112	1298	1270	5.07e-08	55
pORI00000738	100.0	29	0	0	150	178	1386	1358	5.07e-08	55
pORI00000887	99.915	1170	1	0	1	1170	1170	1	0.0	2156
pORI00000887	100.0	51	0	0	84	134	1043	993	2.99e-20	95
pORI00000887	100.0	51	0	0	128	178	1087	1037	2.99e-20	95
pORI00000887	100.0	29	0	0	84	112	1021	993	5.07e-08	55
pORI00000887	100.0	29	0	0	150	178	1087	1059	5.07e-08	55
pORI00000597	77.02	557	91	27	279	817	590	53	0.0	285
pORI00000922	78.788	297	54	8	275	568	405	115	0.0	191
pORI00000739	75.92	299	54	14	275	565	265	553	4.9e-33	137
pORI00000376	100.0	37	0	0	529	565	542	506	1.81e-12	69