DoriC

RefSeq

NZ_CP019984

DoriC accession number

pORI00000934

OriC length

872 nt

OriC AT content

0.6032

The location of oriC region

38945..530 nt

Browse in NCBI

OriC map

OriC sequences

AATACCTCAAACTACTAATACACTTATGCGCAAGCAATAATATATAAAAAAAAACTCCCTGCCCAAAGTAGCATTCCTGTGAAAGTCCCTATAGACAAGGAGGGGGTAAAGATCTATGGAGTTCAATAAATAAAGGTTTGCCACTCTTCCAATTATTTAACTGACAGGGATAATAATGATTCAGATGCTGAAATTCAAAATCCCTTGAAAGCTATAACTAAAAAAACCCTTCAAGAAAGTTACAAGAACAGCTAGATACTATAACATCCACAATTAAAGCAGAAACAATAAAACAAGCTAATAAAACTCTTGAGAAACTAAATGAGATGGATCCTGATCTGGAAAAATTATTTGTACGCGGTTATCCCGACTGGTTTGCTCTCAGGGCTTGTATTTTGGCTTCTGACGCATTTCTTTGCTTAACAGGTGTATTTATATTAAATTATCTTTAAAATGGCTTAGAATGCAAAATAAGTCCTCCTAGCACTATCTGGGCTGTCCGCCGAGCGTCAGTCGAGGCTTCTTCTGAGCCACGTCTTTTGGTTTTGAATTTAGCGAGTGAACGAAGTGAACGCTGCAAGCAAAATGTGAGCGTGATTTTCGCTCACTCCTTTTTGGTTTGGGGCACGGAGACCCCCGCCTCTTATATAACCTCTTTTAAAACCTCTTTTAAAACCTCTTTTAAGGGCATGTTCCACGTTACTCTCCCAAGCGTTTCACAAATGTTTGGGGGTCCAATTGTCTGTTTATGGGGTCCAATTGTCTGTTTATAGGGGTCCAATTGTCTGTTTATGGGGGTCCAATTGTCTGTTTATGGGTCTCGTCTTGAGGTTCCGGCCTTAATGGTAGCCTCTGATTTAGGAGGTGGTTTT

AT-rich region

The information of repeat sequences

Motif GGGGTCCAATTGTCTGTTTAT

Start	P-value		Site
795	3.32e-13	TCTGTTTATG	GGGGTCCAATTGTCTGTTTAT	GGGTCTCGTC
773	3.32e-13	TCTGTTTATA	GGGGTCCAATTGTCTGTTTAT	GGGGGTCCAA
751	3.32e-13	GTCTGTTTAT	GGGGTCCAATTGTCTGTTTAT	AGGGGTCCAA
730	3.32e-13	CAAATGTTTG	GGGGTCCAATTGTCTGTTTAT	GGGGTCCAAT

Motif MACCTCTTTTA

Start	P-value		Site
674	5.54e-07	CCTCTTTTAA	AACCTCTTTTA	AGGGCATGTT
662	5.54e-07	CCTCTTTTAA	AACCTCTTTTA	AAACCTCTTT
650	5.54e-07	CCTCTTATAT	AACCTCTTTTA	AAACCTCTTT
638	6.41e-06	CGGAGACCCC	CGCCTCTTATA	TAACCTCTTT
532	6.93e-06	TCTTCTGAGC	CACGTCTTTTG	GTTTTGAATT

Motif CTAAAWAAACNCTBCAAGMAMDAWVTRRG

Start	P-value		Site
564	4.95e-12	AGCGAGTGAA	CGAAGTGAACGCTGCAAGCAAAATGTGAG	CGTGATTTTC
218	1.19e-11	AAAGCTATAA	CTAAAAAAACCCTTCAAGAAAGTTACAAG	AACAGCTAGA
467	1.79e-11	GCTTAGAATG	CAAAATAAGTCCTCCTAGCACTATCTGGG	CTGTCCGCCG
298	1.87e-10	ATAAAACAAG	CTAATAAAACTCTTGAGAAACTAAATGAG	ATGGATCCTG
44	6.65e-10	GCAATAATAT	ATAAAAAAAAACTCCCTGCCCAAAGTAGC	ATTCCTGTGA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000934	100.0	872	0	0	1	872	1	872	0.0	1611
pORI00000123	96.8	250	3	4	628	872	218	467	0.0	412
pORI00000123	90.173	173	12	5	452	621	8	178	0.0	220
pORI00000123	97.872	47	0	1	773	818	320	366	5e-16	81
pORI00000172	89.82	167	13	4	457	621	362	526	0.0	211
pORI00000172	81.481	189	32	3	628	814	566	753	1.04e-37	152
pORI00000376	91.765	85	5	2	539	622	635	718	3.81e-27	117
pORI00000375	92.405	79	6	0	538	616	412	334	4.93e-26	113
pORI00000007	93.506	77	3	1	542	616	1077	1153	4.93e-26	113
pORI00000208	96.97	66	2	0	551	616	1091	1156	1.77e-25	111