DoriC

RefSeq

NZ_CP018069

DoriC accession number

pORI00000887

OriC length

1170 nt

OriC AT content

0.6231

The location of oriC region

70..1239 nt

Browse in NCBI

OriC map

OriC sequences

AAATATGACACCCGAAAGAAAACGATCGTTGGAAAAATTAATGCAACTAGTGAACGAAGACGGCGGAATTTCAGACGCAGCTTTTGACGCATGGAGCGAATTTCATGGAGAATATAATTAAGTGGGTTTAAATGGCTCTAAAATCGCTTCTAAGAGTTTTTTAGCTTGGACCAATGAAATACACCAAAAACTAAATAAAACGTCTTAAATCGAAAAATACGAGCTCTCAGAGCGACTTTATTTGTAAATGTTGCATATAAGAAATAATTACGGATTTTAGACTTTTGTAGGATATTTTTGAAATAAATATTTATTTCTGTTATAATTTGATTGCAAATAAGTGAACACGAAACACACGAAAGCCCCAGAGAGGTCGGATTCTCTGGGGCTTTTTTTGTGGGCTGAGTCGCCTTAATTAAGTTTTACTTCTTGTTTCGGTTATTCAACCAGTAACTGAACAAAGCGCTTAAAAGCCCAACAAGAAGGGAGCAAATAAAGTTAGTGAACACGAAACACACCTCCTTCCAGTCGCAAGACTGTCGGATAGGCGACAATCAATTATACAATAAAAAAGCAAAAATAAGCCTAAGTTTTTTATTGCCTTGGGGTTGTTAGGGCTTGCCCTGACCGCCTGTAAGGCGCTTTAGAACGAAGGACATAGTTTTTATCGAATCTTGTCTTAGAACGGCTTAGACGAGCTCTCAGGACGCCACAAAGGAGTCCCTAATGAATTATTTTTGGCGAAGGAGCCTAAAGGCGACTGCTGCAAGTAAAATGTGAGAGCGTAGCGATCACTCCTTCTTACAGCGACCATAGGGAGCTAGATTGGCAGTTTAATATCATGCGCGAACCTGTTTATTTTAAAAAGTGGGTGATTTTTTGGCGGGAAATTTTGCTCGCGCGCGCGCGTTTATTTTATTTATTTTTTAAAGATTTTTTAGAACCCTTTTTAGGGGGCAGTTGAGCCTTACTCTCCCAACGGATACAGAAGGGTACTAACAACTTTTTATCTGAGTACTAACAACTTTTTATCTGAGTACTAACAACTTTTTATCTGAGTACTAACAACTTTTTATCTGAGTACTAATATCCTTTTGTATAATAACAACCAACCTATTTACGAGTTGGTTGTTAAAGGTTATTATTTATTTGTAAGGGGGGAAGAAAGGA

AT-rich region

The information of repeat sequences

Motif GAGTACTAACAACTTTTTATC

Start	P-value		Site
1057	8.78e-13	CTTTTTATCT	GAGTACTAACAACTTTTTATC	TGAGTACTAA
1035	8.78e-13	CTTTTTATCT	GAGTACTAACAACTTTTTATC	TGAGTACTAA
1013	8.78e-13	CTTTTTATCT	GAGTACTAACAACTTTTTATC	TGAGTACTAA
991	2.51e-12	GGATACAGAA	GGGTACTAACAACTTTTTATC	TGAGTACTAA
1079	5.64e-11	CTTTTTATCT	GAGTACTAATATCCTTTTGTA	TAATAACAAC

Motif GRDTTTTYAGVGSCHDHTTTTGNBGSCTGDNGCGCVTT

Start	P-value		Site
376	2.54e-15	CAGAGAGGTC	GGATTCTCTGGGGCTTTTTTTGTGGGCTGAGTCGCCTT	AATTAAGTTT
65	5.60e-14	CGAAGACGGC	GGAATTTCAGACGCAGCTTTTGACGCATGGAGCGAATT	TCATGGAGAA
932	1.39e-13	ATTTTTTAAA	GATTTTTTAGAACCCTTTTTAGGGGGCAGTTGAGCCTT	ACTCTCCCAA
874	1.76e-13	AAAAGTGGGT	GATTTTTTGGCGGGAAATTTTGCTCGCGCGCGCGCGTT	TATTTTATTT
606	4.49e-13	TATTGCCTTG	GGGTTGTTAGGGCTTGCCCTGACCGCCTGTAAGGCGCT	TTAGAACGAA

Motif STKAAMACGAAAHABACGAVCTCYCAG

Start	P-value		Site
502	3.33e-13	AATAAAGTTA	GTGAACACGAAACACACCTCCTTCCAG	TCGCAAGACT
204	1.03e-12	AATAAAACGT	CTTAAATCGAAAAATACGAGCTCTCAG	AGCGACTTTA
341	2.08e-12	TTGCAAATAA	GTGAACACGAAACACACGAAAGCCCCA	GAGAGGTCGG
679	3.86e-12	CGAATCTTGT	CTTAGAACGGCTTAGACGAGCTCTCAG	GACGCCACAA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000887	100.0	1170	0	0	1	1170	1	1170	0.0	2161
pORI00000887	100.0	51	0	0	1037	1087	993	1043	2.41e-20	95
pORI00000887	100.0	51	0	0	993	1043	1037	1087	2.41e-20	95
pORI00000887	100.0	29	0	0	1059	1087	993	1021	4.09e-08	55
pORI00000887	100.0	29	0	0	993	1021	1059	1087	4.09e-08	55
pORI00001003	99.915	1170	1	0	1	1170	1170	1	0.0	2156
pORI00001003	93.75	64	2	2	993	1054	134	71	2.41e-20	95
pORI00001003	93.75	64	2	2	1037	1100	178	117	2.41e-20	95
pORI00001003	90.476	42	2	2	993	1032	112	71	4.09e-08	55
pORI00001003	90.476	42	2	2	1059	1100	178	139	4.09e-08	55
pORI00000738	97.988	1193	1	2	1	1170	277	1469	0.0	2049
pORI00000738	100.0	51	0	0	1037	1087	1270	1320	2.41e-20	95
pORI00000738	100.0	51	0	0	993	1043	1336	1386	2.41e-20	95
pORI00000738	100.0	29	0	0	1059	1087	1270	1298	4.09e-08	55
pORI00000738	100.0	29	0	0	993	1021	1358	1386	4.09e-08	55
pORI00000597	77.199	557	90	27	354	892	53	590	0.0	291
pORI00000922	78.788	297	54	8	603	896	115	405	0.0	191
pORI00000739	75.92	299	54	14	606	896	553	265	3.95e-33	137
pORI00000376	100.0	37	0	0	606	642	506	542	1.46e-12	69