RefSeq | NZ_CP009508.1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
DoriC accession number | aORI10010280 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
OriC length | 2014 nt | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
OriC AT content | 0.2925 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
The location of oriC region | 5426789..912 nt | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Browse in NCBI | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
OriC map | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
OriC sequences |
TGTTTAGCTCCTTTTTTTAGTAAAATTCCTTTTTTAGTAAAATTCCTTTTTTAGTACAACTTCAGTTTTTGTAGATTTTTTTAGTTTCTTATGTGGAACAAATATTCTGTAAACAAATATTCTGTAAACAAATATTCTGTAAACAAATATCCTGTTTTTCACAGGTACATTTATCTCAAAAATCTCTATCTTCACAGCTGTAGATCAGTAGTCTTGTGCAGTTAATGTTGTTCCAGATAAGAGCACATTCGTTAAGCAAGATTACTTCTGTCAACACTACTTCTGTCTGCAAATTTGTCATTTACGGCATTGTCGACAGCCATGTTCAAAGAAGTGTATTTAAGAGACACATGTCAATTCTAAAATATTATTATATGTTATTTATATTATGGAATATAATTACTTAAATCAGTTCCATACTTTCTTGTTATCCGGATATTAAAAACAGTTCGTTTTACTTCTATACTTTTAAAATATTATTAAGATTATTAAGAGCAGTATCATTTCCGCTCTTTTCTTCAAAAAGTCTTTTAAAAATTTTGAGTATGATTATTTCTTTATTAAAGTGAGAGTAAAATTGCAGTAGATGATAAGTGGGATAGTGCTGTAGACAGTATGGTAGACAAATATTACTGACAGTTCCGGAACTGAACAACAGGTTCTAAAATAAATCTTTAGAAAAACAATAGGACGTTTAAAAATACCCAGTTAACGTAAAATTTGTAAGTTAATGTATAAACAGAGCCGTTTTTTTATGTATTTACACTCAATGAATATAGTTACTTTTAATATATATCCCTCATTTCCAGTAAAACTATATTCATTTTTTTACTAATTGTTTTGTCATCAATGATCTTACTCACATCAAAACTGTTCTAATTTTTAACACATCCACTTTCGTTTCAGTAAAGGTTTTCTCTTCTCATCTTTATTATCTATTAATAAATATTTTTAGTAGTTTAATGGAAATAAAGGGGTCTAAAATGCTCCGATTTTCTTCCATTAGAAAAAGGGGATTTAAAACTGACCTCAAAAGGTGCTGGAAATTCTAATATTTTATTTTTTTAAGACTGGTTTTAATGATGTCGATTTTTCCAGGGGATATTTATGTTTAAACACAACTCCAATGGAAATAAAGGGGTCCTCACCATAACTATTAATACCGTGTACTTCCATTGCATCTACTGCAAATATGTCCTGATATCATATGTTTATATACAATTATTATCGAAAATTTTAGCTAAAGAGCATTCCGAATACAGATTTAATATAGATTTATCAGGGTTTAAGAGATACCTTAAAGTGCGCAACCAGCTCTTCAGTTTATCCCCTTTCCGTTGGGAATAAAAATTTCAGGCAATTTCAGGCATTACCTTTAAGAAACATGCATTTATCTATCCATCTTCCTTCGTGGAATTCTCATTAATAAGGTTTGACCTATCAAAATTATACGAAATAACAAACCAGGTTTCCAGAATTATCGAGAATCAATAGTGAAAGACAATTTGAAAATTAACAATTACACCTTCCCATATATCTTTTCCATGTCTGGATGTTCTAAATTTCCGAAATATAACTTCGGAATAATGAAAATGTTCTAAAACTCTTTCAAAATCTGAATTAAACATTTATAATTTCCTCGATTATCGGACCAATGGAAAATTGATGATATGATACTTCAGGCAGGACTTTCAAGCATTTAAACTTGGCATAATAATTGGGACTGAAAATTAGGACTTAAAACTAAAAAAATTAAGGGTCAAATATCAAGGGTCAAAGAAGAATTGTAAAATTAAGTTAAAAACGAAACTGAAAATTAAGGTTGAAAATTTAAGATTAATAAGGAAAAACGCATGCAAGCTCATTAAATTTATTTGACTTGCTCTTAACATTTGACTTGCTCTTAACTTTACACACTCTGTCTGTGCATTTACCGCACATATAATTGTCCATATAAATTCGTTCAATCCGTTACATCTGTGTTTTTATAACTTTTATACGAAGAGGGTCATTC
TGTTTAGCTCCTTTTTTTAGTAAAATTCCTTTTTTAGTAAAATTCCTTTTTTAGTACAACTTCAGTTTTTGTAGATTTTTTTAGTTTCTTATGTGGAACAAATATTCTGTAAACAAATATTCTGTAAACAAATATTCTGTAAACAAATATCCTGTTTTTCACAGGTACATTTATCTCAAAAATCTCTATCTTCACAGCTGTAGATCAGTAGTCTTGTGCAGTTAATGTTGTTCCAGATAAGAGCACATTCGTTAAGCAAGATTACTTCTGTCAACACTACTTCTGTCTGCAAATTTGTCATTTACGGCATTGTCGACAGCCATGTTCAAAGAAGTGTATTTAAGAGACACATGTCAATTCTAAAATATTATTATATGTTATTTATATTATGGAATATAATTACTTAAATCAGTTCCATACTTTCTTGTTATCCGGATATTAAAAACAGTTCGTTTTACTTCTATACTTTTAAAATATTATTAAGATTATTAAGAGCAGTATCATTTCCGCTCTTTTCTTCAAAAAGTCTTTTAAAAATTTTGAGTATGATTATTTCTTTATTAAAGTGAGAGTAAAATTGCAGTAGATGATAAGTGGGATAGTGCTGTAGACAGTATGGTAGACAAATATTACTGACAGTTCCGGAACTGAACAACAGGTTCTAAAATAAATCTTTAGAAAAACAATAGGACGTTTAAAAATACCCAGTTAACGTAAAATTTGTAAGTTAATGTATAAACAGAGCCGTTTTTTTATGTATTTACACTCAATGAATATAGTTACTTTTAATATATATCCCTCATTTCCAGTAAAACTATATTCATTTTTTTACTAATTGTTTTGTCATCAATGATCTTACTCACATCAAAACTGTTCTAATTTTTAACACATCCACTTTCGTTTCAGTAAAGGTTTTCTCTTCTCATCTTTATTATCTATTAATAAATATTTTTAGTAGTTTAATGGAAATAAAGGGGTCTAAAATGCTCCGATTTTCTTCCATTAGAAAAAGGGGATTTAAAACTGACCTCAAAAGGTGCTGGAAATTCTAATATTTTATTTTTTTAAGACTGGTTTTAATGATGTCGATTTTTCCAGGGGATATTTATGTTTAAACACAACTCCAATGGAAATAAAGGGGTCCTCACCATAACTATTAATACCGTGTACTTCCATTGCATCTACTGCAAATATGTCCTGATATCATATGTTTATATACAATTATTATCGAAAATTTTAGCTAAAGAGCATTCCGAATACAGATTTAATATAGATTTATCAGGGTTTAAGAGATACCTTAAAGTGCGCAACCAGCTCTTCAGTTTATCCCCTTTCCGTTGGGAATAAAAATTTCAGGCAATTTCAGGCATTACCTTTAAGAAACATGCATTTATCTATCCATCTTCCTTCGTGGAATTCTCATTAATAAGGTTTGACCTATCAAAATTATACGAAATAACAAACCAGGTTTCCAGAATTATCGAGAATCAATAGTGAAAGACAATTTGAAAATTAACAATTACACCTTCCCATATATCTTTTCCATGTCTGGATGTTCTAAATTTCCGAAATATAACTTCGGAATAATGAAAATGTTCTAAAACTCTTTCAAAATCTGAATTAAACATTTATAATTTCCTCGATTATCGGACCAATGGAAAATTGATGATATGATACTTCAGGCAGGACTTTCAAGCATTTAAACTTGGCATAATAATTGGGACTGAAAATTAGGACTTAAAACTAAAAAAATTAAGGGTCAAATATCAAGGGTCAAAGAAGAATTGTAAAATTAAGTTAAAAACGAAACTGAAAATTAAGGTTGAAAATTTAAGATTAATAAGGAAAAACGCATGCAAGCTCATTAAATTTATTTGACTTGCTCTTAACATTTGACTTGCTCTTAACTTTACACACTCTGTCTGTGCATTTACCGCACATATAATTGTCCATATAAATTCGTTCAATCCGTTACATCTGTGTTTTTATAACTTTTATACGAAGAGGGTCATTC
TGTTTAGCTCCTTTTTTTAGTAAAATTCCTTTTTTAGTAAAATTCCTTTTTTAGTACAACTTCAGTTTTTGTAGATTTTTTTAGTTTCTTATGTGGAACAAATATTCTGTAAACAAATATTCTGTAAACAAATATTCTGTAAACAAATATCCTGTTTTTCACAGGTACATTTATCTCAAAAATCTCTATCTTCACAGCTGTAGATCAGTAGTCTTGTGCAGTTAATGTTGTTCCAGATAAGAGCACATTCGTTAAGCAAGATTACTTCTGTCAACACTACTTCTGTCTGCAAATTTGTCATTTACGGCATTGTCGACAGCCATGTTCAAAGAAGTGTATTTAAGAGACACATGTCAATTCTAAAATATTATTATATGTTATTTATATTATGGAATATAATTACTTAAATCAGTTCCATACTTTCTTGTTATCCGGATATTAAAAACAGTTCGTTTTACTTCTATACTTTTAAAATATTATTAAGATTATTAAGAGCAGTATCATTTCCGCTCTTTTCTTCAAAAAGTCTTTTAAAAATTTTGAGTATGATTATTTCTTTATTAAAGTGAGAGTAAAATTGCAGTAGATGATAAGTGGGATAGTGCTGTAGACAGTATGGTAGACAAATATTACTGACAGTTCCGGAACTGAACAACAGGTTCTAAAATAAATCTTTAGAAAAACAATAGGACGTTTAAAAATACCCAGTTAACGTAAAATTTGTAAGTTAATGTATAAACAGAGCCGTTTTTTTATGTATTTACACTCAATGAATATAGTTACTTTTAATATATATCCCTCATTTCCAGTAAAACTATATTCATTTTTTTACTAATTGTTTTGTCATCAATGATCTTACTCACATCAAAACTGTTCTAATTTTTAACACATCCACTTTCGTTTCAGTAAAGGTTTTCTCTTCTCATCTTTATTATCTATTAATAAATATTTTTAGTAGTTTAATGGAAATAAAGGGGTCTAAAATGCTCCGATTTTCTTCCATTAGAAAAAGGGGATTTAAAACTGACCTCAAAAGGTGCTGGAAATTCTAATATTTTATTTTTTTAAGACTGGTTTTAATGATGTCGATTTTTCCAGGGGATATTTATGTTTAAACACAACTCCAATGGAAATAAAGGGGTCCTCACCATAACTATTAATACCGTGTACTTCCATTGCATCTACTGCAAATATGTCCTGATATCATATGTTTATATACAATTATTATCGAAAATTTTAGCTAAAGAGCATTCCGAATACAGATTTAATATAGATTTATCAGGGTTTAAGAGATACCTTAAAGTGCGCAACCAGCTCTTCAGTTTATCCCCTTTCCGTTGGGAATAAAAATTTCAGGCAATTTCAGGCATTACCTTTAAGAAACATGCATTTATCTATCCATCTTCCTTCGTGGAATTCTCATTAATAAGGTTTGACCTATCAAAATTATACGAAATAACAAACCAGGTTTCCAGAATTATCGAGAATCAATAGTGAAAGACAATTTGAAAATTAACAATTACACCTTCCCATATATCTTTTCCATGTCTGGATGTTCTAAATTTCCGAAATATAACTTCGGAATAATGAAAATGTTCTAAAACTCTTTCAAAATCTGAATTAAACATTTATAATTTCCTCGATTATCGGACCAATGGAAAATTGATGATATGATACTTCAGGCAGGACTTTCAAGCATTTAAACTTGGCATAATAATTGGGACTGAAAATTAGGACTTAAAACTAAAAAAATTAAGGGTCAAATATCAAGGGTCAAAGAAGAATTGTAAAATTAAGTTAAAAACGAAACTGAAAATTAAGGTTGAAAATTTAAGATTAATAAGGAAAAACGCATGCAAGCTCATTAAATTTATTTGACTTGCTCTTAACATTTGACTTGCTCTTAACTTTACACACTCTGTCTGTGCATTTACCGCACATATAATTGTCCATATAAATTCGTTCAATCCGTTACATCTGTGTTTTTATAACTTTTATACGAAGAGGGTCATTC
ORB
AT-rich region
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The information of repeat sequences |
Motif AGWASTYTWATGSAWWTAAAGKKGTC
Motif AACAAATATTCTGT
Motif SRAWYTGAAAAWTARGATTTAAAAY
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The result of BLAST |
Download
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