RefSeq | NZ_CP009506.1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
DoriC accession number | aORI10010279 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
OriC length | 2028 nt | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
OriC AT content | 0.2924 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
The location of oriC region | 5016461..930 nt | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Browse in NCBI | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
OriC map | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
OriC sequences |
TGTTTAGCTCCTTTTTTTAGTAAAATTCCTTTTTTAGTAAAATTCCTTTTTTAGTACAACTTCAGTTTTTGTAGATTTTTTTAGTTTCTTATGTGGAACAAATATTCTGTAAACAAATATTCTGTAAACAAATATCCTGTGTTTTCACAGGTACATTTATCTCAAAAATCTCTATCTTCACAGCTGTAGATCAGTAGTCTTGTGCAGTTAATGTTGTTCCAGATAAGAGCACATTCGTTAAGCAAGATTACTTCTGTCAACACTACTTCTGTCTGCAAATTTGTCATTTACGGCATTGTCGACAGCCATGTTCAAAGAAGTGTATTTAAGAGACACATGTCAATTCTAAAATATTATTGTATGTTATTTATATTATGGAATATAATTACTTAAATCAGTTCCATACTTTCTTGTTATCCGGATATTAAAAACAGTTCGTTTTACTTCTATACTTTTAAAATATTATTAAGATTATTAAGATTATTAAGAGCAGTATCATTTCCGCTCTTTTCTTCAAAAAGTCTTTTAAAAATTTTGAGTATGATTATTTCTTTATTAAAGTGAGAGTAAAATTGCAGTAGATGATAAGTGGGATAGTGCTGTAGACAGTATGGTAGACAAATATTACTGACAGTTCCGGAACTGAACTAACAGGTTCTAAAATAAATCTTTAGAAAAACAATAGGACGTTTAAAAATACCCAGTTAACGTAAAATTTATAAGTTAATGTATAAACAGAGCCGTTTTTTTATGTATTTACACTCAATGAATATAGTTACTTTTAATATATATCCCTCATTTCCAGTAAAACTATATTCATTTTTTTACTAATTGTTTTGTCATCAATGATCTTACTCACATCAAAACTGTTCTAATTTTTAACACATCCACTTTCGTTTCAGTAAAGGTTTTCTCTTCTCATTTTTATTATCTATTAATAAATATTTTTAGTAGTTTAATGGAAATAAAGGGGTCTAAAATGCTCCGATTTTCTTCCATTAGAAAAAGGGGATTTAAAACTGACCTCAAAAGGTGCTGGAAATTCTAATATTTCATTTTTTTAAGACTGGTTTTAACGATGTCGATTTTTCCAGGGGATATTTATGTTTAAACACAACTCCAATGGAAATAAAGGGGTCCTCACCATAACTATTAATACCGTGTACTTCCATTGCATCTACTGCAAATATGTCCTGATATCATATGTTTATATACAATTATTATCGAAAATTTTAGCTAAAGAGCATTCCGAATACAGATTTAATATAGATTTATCAGGGTTTAAGAGATACCTTAAAGTGCGCAACCAGCTCTTCAGTTTATCCCCTTTCCGTTGGGAATAAAAATTTCAGGCAATTTCAGGCATTACCTTTAAGAAACATGCATTTATCTATCCATCTTCCTTCGTGGAATTCTCATTAATAAGGTTTGACCTATCAAAATTATACGAAATAACAAACTAGGTTTCCAGAATTATCGAGAATCAATAGTGAAAGACAATTTGAAAATTAACAATTACACCTTCCCATATATCTTTTCCATGTCTGGATGTTCTAAATTTCCGAAATATAACTTCGGAATAATGAAAATGTTCTAAAACTCTTTCAAAATCTGAATTAAACATTTATAATTTCCTCGATTATCGGACCAATGGAAAATTGATGATATGATACTTCAGGCAGGCCTTTCAAGCATTTAAACTTGGCATAATAATTGGGACTGAAAATTAGGACTTAAAACTAAAAAAATTAAGGGTCAAATATCAAGGGTCAAAGAAGAATTGTAAAATTAAGTTAAAAACGAAACTGAAAATTAAGGTTGAAAATTTAAGATTAATAAGGAAAAACGCATGCAAGCTCATTAAATTTATTTGACTTGCTCTTAACATTTGACTTGCTCTTAACATTTGACTTGCTCTTAACTTTACACACTCTGTCTGTGTATTTACCGTACATATAATTGTCCATATAAATTCGTTCAATCCGTTACATCTGTGTTTTTATAACTTTTATACGAAGAGGGTCATTC
TGTTTAGCTCCTTTTTTTAGTAAAATTCCTTTTTTAGTAAAATTCCTTTTTTAGTACAACTTCAGTTTTTGTAGATTTTTTTAGTTTCTTATGTGGAACAAATATTCTGTAAACAAATATTCTGTAAACAAATATCCTGTGTTTTCACAGGTACATTTATCTCAAAAATCTCTATCTTCACAGCTGTAGATCAGTAGTCTTGTGCAGTTAATGTTGTTCCAGATAAGAGCACATTCGTTAAGCAAGATTACTTCTGTCAACACTACTTCTGTCTGCAAATTTGTCATTTACGGCATTGTCGACAGCCATGTTCAAAGAAGTGTATTTAAGAGACACATGTCAATTCTAAAATATTATTGTATGTTATTTATATTATGGAATATAATTACTTAAATCAGTTCCATACTTTCTTGTTATCCGGATATTAAAAACAGTTCGTTTTACTTCTATACTTTTAAAATATTATTAAGATTATTAAGATTATTAAGAGCAGTATCATTTCCGCTCTTTTCTTCAAAAAGTCTTTTAAAAATTTTGAGTATGATTATTTCTTTATTAAAGTGAGAGTAAAATTGCAGTAGATGATAAGTGGGATAGTGCTGTAGACAGTATGGTAGACAAATATTACTGACAGTTCCGGAACTGAACTAACAGGTTCTAAAATAAATCTTTAGAAAAACAATAGGACGTTTAAAAATACCCAGTTAACGTAAAATTTATAAGTTAATGTATAAACAGAGCCGTTTTTTTATGTATTTACACTCAATGAATATAGTTACTTTTAATATATATCCCTCATTTCCAGTAAAACTATATTCATTTTTTTACTAATTGTTTTGTCATCAATGATCTTACTCACATCAAAACTGTTCTAATTTTTAACACATCCACTTTCGTTTCAGTAAAGGTTTTCTCTTCTCATTTTTATTATCTATTAATAAATATTTTTAGTAGTTTAATGGAAATAAAGGGGTCTAAAATGCTCCGATTTTCTTCCATTAGAAAAAGGGGATTTAAAACTGACCTCAAAAGGTGCTGGAAATTCTAATATTTCATTTTTTTAAGACTGGTTTTAACGATGTCGATTTTTCCAGGGGATATTTATGTTTAAACACAACTCCAATGGAAATAAAGGGGTCCTCACCATAACTATTAATACCGTGTACTTCCATTGCATCTACTGCAAATATGTCCTGATATCATATGTTTATATACAATTATTATCGAAAATTTTAGCTAAAGAGCATTCCGAATACAGATTTAATATAGATTTATCAGGGTTTAAGAGATACCTTAAAGTGCGCAACCAGCTCTTCAGTTTATCCCCTTTCCGTTGGGAATAAAAATTTCAGGCAATTTCAGGCATTACCTTTAAGAAACATGCATTTATCTATCCATCTTCCTTCGTGGAATTCTCATTAATAAGGTTTGACCTATCAAAATTATACGAAATAACAAACTAGGTTTCCAGAATTATCGAGAATCAATAGTGAAAGACAATTTGAAAATTAACAATTACACCTTCCCATATATCTTTTCCATGTCTGGATGTTCTAAATTTCCGAAATATAACTTCGGAATAATGAAAATGTTCTAAAACTCTTTCAAAATCTGAATTAAACATTTATAATTTCCTCGATTATCGGACCAATGGAAAATTGATGATATGATACTTCAGGCAGGCCTTTCAAGCATTTAAACTTGGCATAATAATTGGGACTGAAAATTAGGACTTAAAACTAAAAAAATTAAGGGTCAAATATCAAGGGTCAAAGAAGAATTGTAAAATTAAGTTAAAAACGAAACTGAAAATTAAGGTTGAAAATTTAAGATTAATAAGGAAAAACGCATGCAAGCTCATTAAATTTATTTGACTTGCTCTTAACATTTGACTTGCTCTTAACATTTGACTTGCTCTTAACTTTACACACTCTGTCTGTGTATTTACCGTACATATAATTGTCCATATAAATTCGTTCAATCCGTTACATCTGTGTTTTTATAACTTTTATACGAAGAGGGTCATTC
TGTTTAGCTCCTTTTTTTAGTAAAATTCCTTTTTTAGTAAAATTCCTTTTTTAGTACAACTTCAGTTTTTGTAGATTTTTTTAGTTTCTTATGTGGAACAAATATTCTGTAAACAAATATTCTGTAAACAAATATCCTGTGTTTTCACAGGTACATTTATCTCAAAAATCTCTATCTTCACAGCTGTAGATCAGTAGTCTTGTGCAGTTAATGTTGTTCCAGATAAGAGCACATTCGTTAAGCAAGATTACTTCTGTCAACACTACTTCTGTCTGCAAATTTGTCATTTACGGCATTGTCGACAGCCATGTTCAAAGAAGTGTATTTAAGAGACACATGTCAATTCTAAAATATTATTGTATGTTATTTATATTATGGAATATAATTACTTAAATCAGTTCCATACTTTCTTGTTATCCGGATATTAAAAACAGTTCGTTTTACTTCTATACTTTTAAAATATTATTAAGATTATTAAGATTATTAAGAGCAGTATCATTTCCGCTCTTTTCTTCAAAAAGTCTTTTAAAAATTTTGAGTATGATTATTTCTTTATTAAAGTGAGAGTAAAATTGCAGTAGATGATAAGTGGGATAGTGCTGTAGACAGTATGGTAGACAAATATTACTGACAGTTCCGGAACTGAACTAACAGGTTCTAAAATAAATCTTTAGAAAAACAATAGGACGTTTAAAAATACCCAGTTAACGTAAAATTTATAAGTTAATGTATAAACAGAGCCGTTTTTTTATGTATTTACACTCAATGAATATAGTTACTTTTAATATATATCCCTCATTTCCAGTAAAACTATATTCATTTTTTTACTAATTGTTTTGTCATCAATGATCTTACTCACATCAAAACTGTTCTAATTTTTAACACATCCACTTTCGTTTCAGTAAAGGTTTTCTCTTCTCATTTTTATTATCTATTAATAAATATTTTTAGTAGTTTAATGGAAATAAAGGGGTCTAAAATGCTCCGATTTTCTTCCATTAGAAAAAGGGGATTTAAAACTGACCTCAAAAGGTGCTGGAAATTCTAATATTTCATTTTTTTAAGACTGGTTTTAACGATGTCGATTTTTCCAGGGGATATTTATGTTTAAACACAACTCCAATGGAAATAAAGGGGTCCTCACCATAACTATTAATACCGTGTACTTCCATTGCATCTACTGCAAATATGTCCTGATATCATATGTTTATATACAATTATTATCGAAAATTTTAGCTAAAGAGCATTCCGAATACAGATTTAATATAGATTTATCAGGGTTTAAGAGATACCTTAAAGTGCGCAACCAGCTCTTCAGTTTATCCCCTTTCCGTTGGGAATAAAAATTTCAGGCAATTTCAGGCATTACCTTTAAGAAACATGCATTTATCTATCCATCTTCCTTCGTGGAATTCTCATTAATAAGGTTTGACCTATCAAAATTATACGAAATAACAAACTAGGTTTCCAGAATTATCGAGAATCAATAGTGAAAGACAATTTGAAAATTAACAATTACACCTTCCCATATATCTTTTCCATGTCTGGATGTTCTAAATTTCCGAAATATAACTTCGGAATAATGAAAATGTTCTAAAACTCTTTCAAAATCTGAATTAAACATTTATAATTTCCTCGATTATCGGACCAATGGAAAATTGATGATATGATACTTCAGGCAGGCCTTTCAAGCATTTAAACTTGGCATAATAATTGGGACTGAAAATTAGGACTTAAAACTAAAAAAATTAAGGGTCAAATATCAAGGGTCAAAGAAGAATTGTAAAATTAAGTTAAAAACGAAACTGAAAATTAAGGTTGAAAATTTAAGATTAATAAGGAAAAACGCATGCAAGCTCATTAAATTTATTTGACTTGCTCTTAACATTTGACTTGCTCTTAACATTTGACTTGCTCTTAACTTTACACACTCTGTCTGTGTATTTACCGTACATATAATTGTCCATATAAATTCGTTCAATCCGTTACATCTGTGTTTTTATAACTTTTATACGAAGAGGGTCATTC
ORB
AT-rich region
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The information of repeat sequences |
Motif CAGWWBTNWWATGGAAWTAAHRGGGTYYAARATAWAHC
Motif GACTTGCTCTTMAC
Motif AGGGTCA
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The result of BLAST |
Download
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