DoriC

RefSeq

NZ_CP009515.1

DoriC accession number

aORI10010286

OriC length

1686 nt

OriC AT content

0.29

The location of oriC region

4138843..720 nt

Browse in NCBI

OriC map

OriC sequences

AATCAGGAAGATTTCATAGAATCAGGAAGATTTCATAGAATCAGGAAGATTTCATAGAACAGGAAGATTTCATAGAACAGGAAGATTTCATAGAATCAGGAAAAATACTCCCGAATAACTCAATCTTGAAACCCAATTAAAACTTTAATTTCAAGACTTCAACGAAACTCCAGTTTTTTCACCTTCGTTTTTTCACCTTCATTTTTAGTTTAGACCTTTACAAATTTAATTAAACAACGCGACTTTATTGTATGCTATATTATACTGTTGAAAATAATTCATCGCATTTTTATAATACTATTTTGTTATCCGGATATTATAAACGGTTCATTTTATTTCGGCACATTGGATAAATTATTGAGAGTGTTACAACTTGAGAGTGTTAGTTACAACTTGAGAGTGTTAACTTGAGAGTGTTACAATTTTCGATTTATCTCTTCAAAATTTCCTTTATTAGCTTAGTTGATAAGTGAAATTACAGTATAAACTAATTAAATGATCAGTTCTAAAAACTAATAAACTATTCTAATCACAAATTTTAAAAAAACAATCGATTTTGGAAACTATACAATTTAAAGAAAATTTATAATTAAATACATAAATATAGCTAATTTTTTATAGATTTACACTCCAGATATATAGTTACATTTGATGTATATTCCTCATTTTCTGTCAAACTATCTCTATTTTTTAGGTAATCGGTTTGTTATCATCTATCTTCTTAACATCAAAACTGTTTTTATTTTTTATATATCCACATTCGTTTCAGTATAGCTGTTTGTTTTCTTTTCATTATTATTTCGTGCTAAATATTTTTCATTATTCACTGGAAGTAAAGGGGTTCAATATTTGCCTATATTTTTCCATTCGAAAAAGGGGATTTAAAACTGACCTTCATGGGTGCTGGAATTGTAAATCTTTTATTTTTTTAAAACTGATTTTGATGATATCGATTTGTTCAGGGGGGATTTAAGGAAAATATCCGTTCCATTGGAAATTAAGGGGGCTTAACCATAACTATTAATACCGTGTACTTCCATTGCATCTACTGCAGATATACCTTGAAATTAAATGTTTATATATAAATCAAATCTAAAATTTTGGTAAATGAATCTCCAGATTACAGGTTTTATCAGGGCTTAAGAGATGCTTTAAACTACGTAACTCCCTCTCCAGTTTATCCCCTGCCTGTTGAAAACATAAAAATCAGGCATTAACTTTAAGAAACATGCATTTATCTATCCATCTCCCTTTGTGAATTTCTCATCTATCAGGTTTGACTTATCTTAATTATACTAAACAACAAACAAGGTTTCCAGAATTACTGAGAATCAAGAGTGAAAGACACTTTGAATATTAACAGTTATGCCTTTCCATATATCTTTTCCATGTCTGGGCGATATACTGTCTGATATATTCTGTCTGATATATTCTATCTAATATATTCAGTTTGAAATATTCTGTCTGGCTAGTGTTCTGAGTTTCCAATATACTAACTTTAAAATTAAAAAAAGGAAAAAAGCACGTATGAACTCATAAAGTGTGTATAGCTAACTAAATTTATTTAATAAGTTATTAACTTTGCAGACTCTACCGGTGTATTAACCGTACATATTAATTGTCAGTATCAACCACCTTAACCCGTGACATCCGGGTATTATTATTTTTATGTGAAGAGGGTTATTC

ORB AT-rich region

The information of repeat sequences

Motif AGGAAGATTTCATAG

Start	P-value		Site
79	1.51e-09	TTCATAGAAC	AGGAAGATTTCATAG	AATCAGGAAA
61	1.51e-09	TTCATAGAAC	AGGAAGATTTCATAG	AACAGGAAGA
43	1.51e-09	TCATAGAATC	AGGAAGATTTCATAG	AACAGGAAGA
24	1.51e-09	TCATAGAATC	AGGAAGATTTCATAG	AATCAGGAAG
5	1.51e-09	AATC	AGGAAGATTTCATAG	AATCAGGAAG

Motif CTTGAGAGTGT

Start	P-value		Site
407	1.21e-07	AGAGTGTTAA	CTTGAGAGTGT	TACAATTTTC
393	1.21e-07	TTAGTTACAA	CTTGAGAGTGT	TAACTTGAGA
373	1.21e-07	AGTGTTACAA	CTTGAGAGTGT	TAGTTACAAC
357	6.88e-07	TGGATAAATT	ATTGAGAGTGT	TACAACTTGA
1671	2.59e-06	TTATTTTTAT	GTGAAGAGGGT	TATTC

Motif MAGGGG

Start	P-value		Site
960	1.81e-05	TCGATTTGTT	CAGGGG	GGATTTAAGG
1000	5.74e-05	ATTGGAAATT	AAGGGG	GCTTAACCAT
874	5.74e-05	CCATTCGAAA	AAGGGG	ATTTAAAACT
836	5.74e-05	ACTGGAAGTA	AAGGGG	TTCAATATTT
1134	7.78e-05	CAGGTTTTAT	CAGGGC	TTAAGAGATG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010286	100.0	1686	0	0	1	1686	1	1686	0.0	3114
aORI10010379	84.13	1046	156	10	408	1447	376	1417	0.0	1003
aORI10010378	84.13	1046	156	10	408	1447	344	1385	0.0	1003
aORI10010017	79.745	943	173	18	534	1466	1414	480	0.0	667
aORI10010280	77.938	902	161	30	524	1396	660	1552	0.0	529
aORI10010279	77.79	905	157	34	524	1396	656	1548	0.0	518
aORI10010287	76.671	733	147	21	665	1385	550	1270	0.0	385
aORI10010285	73.392	684	146	34	727	1392	729	1394	0.0	222
aORI10010284	73.392	684	146	34	727	1392	729	1394	0.0	222
aORI10010281	73.392	684	146	34	727	1392	729	1394	0.0	222
aORI10010283	73.392	684	145	35	727	1392	729	1393	0.0	220
aORI10010018	73.392	684	145	35	727	1392	857	193	0.0	220
aORI10010282	74.542	546	115	22	727	1260	771	1304	0.0	217
aORI10010192	87.379	103	11	2	968	1069	734	633	2.16e-27	117
aORI10010192	89.062	64	4	2	1200	1260	536	473	3.67e-15	77