RefSeq NC_019962.1
DoriC accession number aORI10010237
OriC length 1242 nt
OriC AT content 0.4485
The location of oriC region 3790380..1142 nt
Browse in NCBI
OriC map
OriC sequences
CTGTGGGGCCTCCAGCACCGCGGGGTGCAGTTGCGCGTACTACAAACTGAACTCACTTAAGCCTACGTCAGACATGTAGACAATTCGATGACCGGGAGTTGTCGGTCGGACGGACAGTGGTTCACCTAGAACTGACGAGAAGTGACCGATAATCGAGGGAAAACGACAGTGGGACTCGAGAACGTGTTCCGCTTCGAGCCGTTAGCGTAGAACCGTGTTTCGAAGGAGAGTATTGGTCTCTGGTAACGAGTGCCCCGATATGGTGTGTCGAGCTGTATGTGATAAAGGATCACCTAGTAGGATCCCGGAGCGGAGCCCCCCACCCCTTCGTTTCGAGTGGAGACCGACGAACGGGGGAGTGGATCGAGAGACGGAATCGGTCCGGATTCCCCCTTGACTTCCACTCGAGCCGCCGTTCGGGAGGGTCTCGAGGCCGAACGCGGCGAGAGAATCGGTTCTAGTAACTCGAAGACTGATCTAGTAATTAGAGAAGCTATGAGGTGTCGATCTAGTAGGCACTAGCAATACTGAATAACCCTCTAGCAAAATACTGTTGTCTGCTAGTTCTGCGGATACTGTTTCTAGGCTATATACATAAAACTTGCCTCCTAAAATGACCCCCTCCCCCCACCCCACCCTTGGACTGCGTTCCACCCGAAACGAAGGGGTGGGGGGAAGGTATCGACTATTGGTATCCTACACCACACATTCTCTTCCGGCGTTGTCAGTCGATCCCACATCTACTTCCGATACAGAACTCGGCCGCACTCTTCAGTTACTATCCCAATATGTATCGTCGACATGTGCATTGACATGTTACCAACGCACACGCAGTACGTCCGTCCGTTCCAGTCGAAGCCAGCCCCCTGCCGGTCGACTCGAAATCCCGTTCCCAATGTTCTCACCTGTTCCCGATACCGCGTTCGAACTCACCTTTCGGACGGCGGTGTCGCTCGTGACACAAGCGTGTGAGCAGCGGCGATCGGTTCCGTTCGGCCACCGAACGGCGGACGCGATGTCGTTGGCAGGGCCGAGTCACAGCCATCGATCGGCGGCTGTTTCTCGATCCGGACGGGGAAGGGACAAATTTATTAGCGTGGTTTTCCTCTGTTTCGTTTGCATCAACTGGACCCGAATCGTGTAACCGGGATCGCGAATCCACTGAAGGAAGCCATCGTACGAGGCTCTTTCCGGTTGCCGACTCGGTACTCCACCCGAAACCAGGGGGTTCGTGTACGACCG
CTGTGGGGCCTCCAGCACCGCGGGGTGCAGTTGCGCGTACTACAAACTGAACTCACTTAAGCCTACGTCAGACATGTAGACAATTCGATGACCGGGAGTTGTCGGTCGGACGGACAGTGGTTCACCTAGAACTGACGAGAAGTGACCGATAATCGAGGGAAAACGACAGTGGGACTCGAGAACGTGTTCCGCTTCGAGCCGTTAGCGTAGAACCGTGTTTCGAAGGAGAGTATTGGTCTCTGGTAACGAGTGCCCCGATATGGTGTGTCGAGCTGTATGTGATAAAGGATCACCTAGTAGGATCCCGGAGCGGAGCCCCCCACCCCTTCGTTTCGAGTGGAGACCGACGAACGGGGGAGTGGATCGAGAGACGGAATCGGTCCGGATTCCCCCTTGACTTCCACTCGAGCCGCCGTTCGGGAGGGTCTCGAGGCCGAACGCGGCGAGAGAATCGGTTCTAGTAACTCGAAGACTGATCTAGTAATTAGAGAAGCTATGAGGTGTCGATCTAGTAGGCACTAGCAATACTGAATAACCCTCTAGCAAAATACTGTTGTCTGCTAGTTCTGCGGATACTGTTTCTAGGCTATATACATAAAACTTGCCTCCTAAAATGACCCCCTCCCCCCACCCCACCCTTGGACTGCGTTCCACCCGAAACGAAGGGGTGGGGGGAAGGTATCGACTATTGGTATCCTACACCACACATTCTCTTCCGGCGTTGTCAGTCGATCCCACATCTACTTCCGATACAGAACTCGGCCGCACTCTTCAGTTACTATCCCAATATGTATCGTCGACATGTGCATTGACATGTTACCAACGCACACGCAGTACGTCCGTCCGTTCCAGTCGAAGCCAGCCCCCTGCCGGTCGACTCGAAATCCCGTTCCCAATGTTCTCACCTGTTCCCGATACCGCGTTCGAACTCACCTTTCGGACGGCGGTGTCGCTCGTGACACAAGCGTGTGAGCAGCGGCGATCGGTTCCGTTCGGCCACCGAACGGCGGACGCGATGTCGTTGGCAGGGCCGAGTCACAGCCATCGATCGGCGGCTGTTTCTCGATCCGGACGGGGAAGGGACAAATTTATTAGCGTGGTTTTCCTCTGTTTCGTTTGCATCAACTGGACCCGAATCGTGTAACCGGGATCGCGAATCCACTGAAGGAAGCCATCGTACGAGGCTCTTTCCGGTTGCCGACTCGGTACTCCACCCGAAACCAGGGGGTTCGTGTACGACCG
CTGTGGGGCCTCCAGCACCGCGGGGTGCAGTTGCGCGTACTACAAACTGAACTCACTTAAGCCTACGTCAGACATGTAGACAATTCGATGACCGGGAGTTGTCGGTCGGACGGACAGTGGTTCACCTAGAACTGACGAGAAGTGACCGATAATCGAGGGAAAACGACAGTGGGACTCGAGAACGTGTTCCGCTTCGAGCCGTTAGCGTAGAACCGTGTTTCGAAGGAGAGTATTGGTCTCTGGTAACGAGTGCCCCGATATGGTGTGTCGAGCTGTATGTGATAAAGGATCACCTAGTAGGATCCCGGAGCGGAGCCCCCCACCCCTTCGTTTCGAGTGGAGACCGACGAACGGGGGAGTGGATCGAGAGACGGAATCGGTCCGGATTCCCCCTTGACTTCCACTCGAGCCGCCGTTCGGGAGGGTCTCGAGGCCGAACGCGGCGAGAGAATCGGTTCTAGTAACTCGAAGACTGATCTAGTAATTAGAGAAGCTATGAGGTGTCGATCTAGTAGGCACTAGCAATACTGAATAACCCTCTAGCAAAATACTGTTGTCTGCTAGTTCTGCGGATACTGTTTCTAGGCTATATACATAAAACTTGCCTCCTAAAATGACCCCCTCCCCCCACCCCACCCTTGGACTGCGTTCCACCCGAAACGAAGGGGTGGGGGGAAGGTATCGACTATTGGTATCCTACACCACACATTCTCTTCCGGCGTTGTCAGTCGATCCCACATCTACTTCCGATACAGAACTCGGCCGCACTCTTCAGTTACTATCCCAATATGTATCGTCGACATGTGCATTGACATGTTACCAACGCACACGCAGTACGTCCGTCCGTTCCAGTCGAAGCCAGCCCCCTGCCGGTCGACTCGAAATCCCGTTCCCAATGTTCTCACCTGTTCCCGATACCGCGTTCGAACTCACCTTTCGGACGGCGGTGTCGCTCGTGACACAAGCGTGTGAGCAGCGGCGATCGGTTCCGTTCGGCCACCGAACGGCGGACGCGATGTCGTTGGCAGGGCCGAGTCACAGCCATCGATCGGCGGCTGTTTCTCGATCCGGACGGGGAAGGGACAAATTTATTAGCGTGGTTTTCCTCTGTTTCGTTTGCATCAACTGGACCCGAATCGTGTAACCGGGATCGCGAATCCACTGAAGGAAGCCATCGTACGAGGCTCTTTCCGGTTGCCGACTCGGTACTCCACCCGAAACCAGGGGGTTCGTGTACGACCG
ORB     AT-rich region
The information of repeat sequences

Motif TCCACYCGAA

StartP-valueSite
12102.07e-06GACTCGGTACTCCACCCGAAACCAGGGGGT
6502.07e-06TGGACTGCGTTCCACCCGAAACGAAGGGGT
8743.90e-06CCCCTGCCGGTCGACTCGAAATCCCGTTCC
8483.90e-06GTCCGTCCGTTCCAGTCGAAGCCAGCCCCC
4005.03e-06CCCCTTGACTTCCACTCGAGCCGCCGTTCG

Motif TCTAGTAA

StartP-valueSite
4779.72e-06CGAAGACTGATCTAGTAATTAGAGAAGC
4579.72e-06GAGAATCGGTTCTAGTAACTCGAAGACT
5083.34e-05GAGGTGTCGATCTAGTAGGCACTAGCAA
2393.34e-05AGTATTGGTCTCTGGTAACGAGTGCCCC
5394.54e-05TGAATAACCCTCTAGCAAAATACTGTTG

Motif GGGRKARNGDATCVACTRDHGGDATC

StartP-valueSite
6712.15e-12CGAAGGGGTGGGGGGAAGGTATCGACTATTGGTATCCTACACCACA
3531.80e-11ACCGACGAACGGGGGAGTGGATCGAGAGACGGAATCGGTCCGGATT
11476.30e-11TCGTGTAACCGGGATCGCGAATCCACTGAAGGAAGCCATCGTACGA
2799.35e-11CGAGCTGTATGTGATAAAGGATCACCTAGTAGGATCCCGGAGCGGA
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
aORI10010237 100.0 1242 0 0 1 1242 1 1242 0.0 2294
aORI10010219 88.0 75 9 0 1074 1148 70 144 3.46e-19 90
aORI10010372 88.732 71 6 2 5 73 1650 1580 4.48e-18 86
aORI10010393 92.982 57 4 0 1077 1133 167 111 1.61e-17 84
aORI10010150 92.982 57 4 0 1075 1131 1238 1294 1.61e-17 84
aORI10010201 86.486 74 9 1 5 77 1083 1010 2.08e-16 81
aORI10010201 89.655 58 6 0 1077 1134 180 123 9.69e-15 75
aORI10010300 88.889 54 3 2 622 674 483 432 2.1e-11 64
aORI10010315 100.0 33 0 0 1103 1135 1278 1310 7.54e-11 62
aORI10010082 88.462 52 5 1 624 675 527 577 7.54e-11 62
aORI10010171 100.0 32 0 0 1103 1134 814 845 2.71e-10 60
aORI10010312 86.792 53 5 2 623 675 594 544 9.76e-10 58
aORI10010160 84.483 58 9 0 1077 1134 1267 1324 9.76e-10 58
aORI10010137 100.0 28 0 0 648 675 252 225 4.54e-08 53
aORI10010009 100.0 28 0 0 648 675 228 201 4.54e-08 53