DoriC

RefSeq

NC_013922.1

DoriC accession number

aORI10010160

OriC length

1433 nt

OriC AT content

0.5038

The location of oriC region

1960870..1962302 nt

Browse in NCBI

OriC map

OriC sequences

CTGTAGGGCCCTCCAGCACCGCGGGGTGCATCTGCGCGTACTACTGACTGAACTCACTTAAGCCTACGTCAAACGTGTTGATTTTCAGACGAAAAAGCATAGATTCCTGTCAGGTCTGGTCGCATGGTTGAGAAGAGAGTGAGTGTTGTGAGAGCGAGACGGTATGAATTAGCTTCTGGATGGACGGGTTGGCCTATATATAATCCAGAGGCAATATAGAGACGACCGCTGTGACGAGCTGAAATACCATGGGTTCGATAGAGCTAGTATTTCTCATGGGATACTAGATGTAAGTAATCGATACTAGAACACTCTAGACAAATCCTAGGTGGTCAGTTTTCGAATATGTTGGACGAATCCGACGGTGTTCGAACACCCCCACCCCTTCGTTTCAACTGGAGACCAGTGATGGAGTGGGGTTGGAGAGCTGGTGTTGAGCAGCAGTAGCGGGTTCTGTTTCAACTCGAACGGGAGTACAGACGACAACTCGGAAGAAAACGAAGGATGCGAGAAGTCTAGTAATAGATCTCCATAAGAGGGACAGATCTAGTAGCAACTAGCAATAAAACTAACTTCTCTAGTAAAAACATCAATCTGCTAGTGGTACGGTCCTTATTTCTCACCCATCATTATAAATCCTCTCGTTCTAGAAGTCACCCTCCCCCACCCCTCTCTCGACTCTCTCCAGTTGAAACGAAGGGGTGGGGGGCACCACCCCTTTCTCACACAAGTTTCCTGACTCATTGTTGGCAAGACACAATGATGATGATTCACACCCCTTCGTATCATCCCCCACACCACGCTGCATAATCTCTCACCTCACCATCTCCTCTCACCATCTCCTCTCACCAATCTTCTCTCACCAATCTACTTTCACCAGTCCACCTTCCAACTTTCCCAAAAATTCGAACTTCTGGGATCCGAACCTCCTTGAATCCGAACCTCCTGGATTGATCGACCCGAGTAGCCCACAGAAATCACCTCCACATCCACAGTCTGAGGCAGGCACGGGTCTAGGATCGGACGGAGCTGGGACAGGCATGCCCGATTCACAGCGGATCGAATCACGCATAGCTGGTTGCTGCACGAGTTGTAGCTGTCTTCTATTTTCTTCTATACGTGTGCGCGCTAGACCAACAAGATAGACACAGTGACAAGATAGACACAGTGAATACCAGTCTATCCTTTCACTGTTGGTCCAGTAGTTCAGTGTCGCAGTTGCTCACGGATTACTCGGTTCGGTGAACCACTCAACGTCCGTGAAGTGAAGGGAAGAATTTAATATCACCGTCTTCCTCTGTTTCGTTTGCATCAACTGGATCCGGACCGGGTCGTTAGGACTGTAGACTGGCCCCGCTGGCTCGCCTACACCGCTATATCCTCGCCCTCGGGTTCGGATCTGCAGTCGAAACAAGGGGGTACGTGTACGACGA

ORB AT-rich region

The information of repeat sequences

Motif TCTCCTYTCAC

Start	P-value		Site
839	3.35e-07	CCTCTCACCA	TCTCCTCTCAC	CAATCTTCTC
826	3.35e-07	CACCTCACCA	TCTCCTCTCAC	CATCTCCTCT
853	9.63e-07	CTCTCACCAA	TCTTCTCTCAC	CAATCTACTT
867	2.21e-06	CTCTCACCAA	TCTACTTTCAC	CAGTCCACCT
1181	2.51e-06	AATACCAGTC	TATCCTTTCAC	TGTTGGTCCA

Motif ABAABAGAGHBVSAGTDGNGDGABAGABMYRGTRDNDABYAGC

Start	P-value		Site
131	7.24e-18	CGCATGGTTG	AGAAGAGAGTGAGTGTTGTGAGAGCGAGACGGTATGAATTAGC	TTCTGGATGG
400	3.52e-16	TTTCAACTGG	AGACCAGTGATGGAGTGGGGTTGGAGAGCTGGTGTTGAGCAGC	AGTAGCGGGT
1137	2.85e-15	CGCTAGACCA	ACAAGATAGACACAGTGACAAGATAGACACAGTGAATACCAGT	CTATCCTTTC
519	1.33e-14	GAGAAGTCTA	GTAATAGATCTCCATAAGAGGGACAGATCTAGTAGCAACTAGC	AATAAAACTA

Motif TYCGAACNTSYTGGA

Start	P-value		Site
936	3.96e-09	CCTCCTTGAA	TCCGAACCTCCTGGA	TTGATCGACC
920	4.73e-08	ACTTCTGGGA	TCCGAACCTCCTTGA	ATCCGAACCT
905	1.37e-07	TTCCCAAAAA	TTCGAACTTCTGGGA	TCCGAACCTC
339	1.49e-07	GTGGTCAGTT	TTCGAATATGTTGGA	CGAATCCGAC
358	7.03e-07	GTTGGACGAA	TCCGACGGTGTTCGA	ACACCCCCAC

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010160	100.0	1433	0	0	1	1433	1	1433	0.0	2647
aORI10010171	81.564	179	25	8	1258	1432	779	953	1.09e-34	141
aORI10010171	94.366	71	4	0	1	71	1	71	3.07e-25	110
aORI10010315	94.737	76	4	0	6	81	7	82	5.1e-28	119
aORI10010315	77.193	171	29	9	1267	1432	1252	1417	1.11e-19	92
aORI10010201	91.892	74	6	0	6	79	1082	1009	1.43e-23	104
aORI10010201	91.525	59	5	0	1267	1325	180	122	6.7e-17	82
aORI10010219	76.19	168	34	6	1267	1432	73	236	1.86e-17	84
aORI10010393	88.889	63	7	0	1261	1323	173	111	8.66e-16	79
aORI10010150	86.301	73	9	1	1260	1331	1233	1305	8.66e-16	79
aORI10010237	84.483	58	9	0	1267	1324	1077	1134	1.13e-09	58
aORI10010167	97.059	34	1	0	375	408	197	230	1.13e-09	58