DoriC

RefSeq

NZ_CP019285.1

DoriC accession number

aORI10010315

OriC length

1418 nt

OriC AT content

0.5564

The location of oriC region

975431..976848 nt

Browse in NCBI

OriC map

OriC sequences

CCTTAGGGGCCCTCCAGCACCGCGGGGTGCATCTGCGCGTACTACAAACTGAATTCACTTAAGCCTACGTCAAACGTATTGAAAGAACGACAATATGAACTGTCAGGATACGTACTACGATCCGGAGCTCCGGTCGTGACTCGGACTGTCAACGAGTACCGAGACAGAAGTCCCCAATGAGGATCGACCACCCCCACCCCTTCGTTTCAAGTGGAGATCGTCGAGGCCCCGGTGGGATGGGGCCGGCCGATCGACGCTCGAGTACCCCCGATTTCGACTCGAGCGAGCGATTGAGCCCTCGAGACAGCCGAATTCGAGGAAAGAGCGGATTCTAGTAACTCGATCCGTTAGAGAACGCTGTTCTAGTTCGAACTAGTAACTAAATACAACTCCTCTAGTAAAAATTCTATTTTGCTAGGAGTGCGGATATTGTTTCTGCTAACAGGTAATAAAACCTGTCTCTCTAGAGACCCCTCCCTCCCCCACCCCCTCTCGGACTGTTCCACTTGAAACAAAGGGGTGGGGGGGGGCTTCTCGATGACCGGTCGGATTTCTAACCTTTCCTGATCGTCCGCGAACTCCCGAGCAGACCATTCATTGATCGGACAATTCGCCCCGCCGATCCACGCTTTCTCTCGGTCATGAACCGTCGCTCCAGGGTTCCAGGTTGATCCGCCGCGTCTCCCTTCCGGCCTGTTTTCCCACAACGTCTCACTCGACTGCAGGTTTTCTCCCGGCTCCCGCCCTCGAGCGCTCGACTGGGGGAATGGTCGAATTGGTCTCGTTCGACGTCCATGCCGACACTGATGCCGACCTCGAGTGCGATGAACAGCCGACCAGCCCACGAGTCCATACGCGCTACACGCGCCTGCGCAGAGACCACACCCACAGCTATCGATAAAGACGAGTCACCCACAGCTACGGCAAAGACGAGCGTCCGTTTCTCGGACCAATCTATAGTAACAACTGCAACTATTCACACACTGATCGCCGATCCGTCTGGCGATCAGATGTGCACTGACTTGCAGTGGCTACTATAGCGCTCCCTCCAACGATTGGTCCAACGAACGAGGCAATCCCTCGAACGGACGACTCCCGTCCTCGCCACGAGCTATCAATCGACGATCACGAAACTCGGTTTCGACCTGAAACGATGGGTCCTTTTCCACGAAATCCCGTCCCCCACCGTTCTCGAGGACCAAACCCGGGGTAGACCGACCGACGAGGAGGTCTTCGATCACGGATTTGAACGAAGGGAAGAATTTAAGACCTCACTGTTCCTCTGTTTCGTTTGCATCAACTGGACCCGAGCCGGGGTGGCTGAAAAGCAGACGGGCCGCACTGGCCCACCGGAACCTCGATATACCTGGTTTTGGGTTCGGTATTCCACTCGAAATCAGGGGGTACGTGTACGACGG

ORB AT-rich region

The information of repeat sequences

Motif TASTAVHAACTVNAT

Start	P-value		Site
40	1.93e-08	CATCTGCGCG	TACTACAAACTGAAT	TCACTTAAGC
396	1.23e-07	ACAACTCCTC	TAGTAAAAATTCTAT	TTTGCTAGGA
371	1.23e-07	TTCTAGTTCG	AACTAGTAACTAAAT	ACAACTCCTC
330	1.65e-07	AAAGAGCGGA	TTCTAGTAACTCGAT	CCGTTAGAGA
958	5.07e-07	GACCAATCTA	TAGTAACAACTGCAA	CTATTCACAC

Motif TDTTCCACTTGAAACVANGGG

Start	P-value		Site
499	2.53e-13	CCTCTCGGAC	TGTTCCACTTGAAACAAAGGG	GTGGGGGGGG
1383	5.18e-10	TTGGGTTCGG	TATTCCACTCGAAATCAGGGG	GTACGTGTAC
1138	1.29e-09	ACGAAACTCG	GTTTCGACCTGAAACGATGGG	TCCTTTTCCA
1284	3.50e-09	ACTGTTCCTC	TGTTTCGTTTGCATCAACTGG	ACCCGAGCCG

Motif SGAGSRSGCNWYTSVDBGAACGGWCGAAT

Start	P-value		Site
583	8.45e-12	CGCGAACTCC	CGAGCAGACCATTCATTGATCGGACAATT	CGCCCCGCCG
1235	1.73e-11	AGGAGGTCTT	CGATCACGGATTTGAACGAAGGGAAGAAT	TTAAGACCTC
748	5.07e-11	CTCCCGCCCT	CGAGCGCTCGACTGGGGGAATGGTCGAAT	TGGTCTCGTT
523	8.79e-11	CAAAGGGGTG	GGGGGGGGCTTCTCGATGACCGGTCGGAT	TTCTAACCTT
1066	9.46e-11	TTGGTCCAAC	GAACGAGGCAATCCCTCGAACGGACGACT	CCCGTCCTCG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010315	100.0	1418	0	0	1	1418	1	1418	0.0	2619
aORI10010160	94.737	76	4	0	7	82	6	81	5.05e-28	119
aORI10010160	77.193	171	29	9	1252	1417	1267	1432	1.1e-19	92
aORI10010171	78.09	178	28	10	1247	1418	782	954	5.08e-23	102
aORI10010171	90.411	73	7	0	7	79	6	78	2.37e-21	97
aORI10010201	88.75	80	9	0	1	80	1088	1009	6.58e-22	99
aORI10010201	93.75	64	2	2	1247	1309	185	123	8.51e-21	95
aORI10010393	92.188	64	5	0	19	82	1581	1518	1.1e-19	92
aORI10010393	89.062	64	4	3	1247	1308	173	111	3.08e-15	77
aORI10010150	76.163	172	30	10	1252	1418	1240	1405	2.38e-16	81
aORI10010219	86.207	58	8	0	1252	1309	73	130	2.4e-11	64
aORI10010237	100.0	33	0	0	1278	1310	1103	1135	8.63e-11	62