RefSeq NC_019792.1
DoriC accession number aORI10010201
OriC length 1088 nt
OriC AT content 0.4724
The location of oriC region 1580920..1582007 nt
Browse in NCBI
OriC map
OriC sequences
ATCTTCGTCTGACATTCGTCGTTCTAGCACCCCCTCGTTTCGGGTGGAATCTGGCCCGGAATTAGGAATACTGCGGTGTAGACGTTCTATTACAGCATATTTACGCAGTCGACAGTCTAACCCGGGTCCAGTTGATGCAAACGAAACAGAGGAACACGACGGTATTAAATTCTTCCCTTCGTTCATCACTGTTTTACCAGGTGCTGTATCACAGCATCGTGACGGCGTCCGGTGGTCGTCTCGAAAAACGGCAGTGCACAGCCAGGGACGGGTCCGTTTTGGATCGATTCGAGCAGGGAAGACGGTGTCGATCGGGCCATGATTTCGCGTCGACAGAGCGCGGAGTCACTTCGCGGGTGAATCCAAAGAGGGACTGGCGAGAACGAAGGGGGTAGGAGCGGTCGGCTTGTTGGCGGGCCCCAGAGGGAGTGAGTGGTGTTGGCACGACTTTAGTGTGAGTGTATTACCGTGAGAGCATATTACCGTGACTGCCGGGAAGCCCCCCACCCCTTCGTTTCAAGTGGAACTGTCCAACGGAGGGGTGGGGGGTGAGTCCCTCTTTCTAGAGGCGAATTTTTATTATACTGGGGGGAAAACAGTAACCGTAGCACTAGCAAATCCAATTATTTACTAGAGAAGTATTCTTTAGTTGCTAGATCGAACTAGATTAGCGTCTTTTAGCGTATCGAATTACTAGACTCTCGCTTTCTTCGAATTCAGCCGTCTCGCACTCGTCTCTCTCCACTCGAGTGGAAACTGAGGGGGAGATCCCTCACTCGGACCGTTCTCCATGGGTGGGGGATCGTTCGTCTCCAGTTGAAACAGAGGGGTGGGGGGTCTTGTCGATGCGAGGTAATTGCTACCCTGTCGAATGGGAGTTTGTATCACAATATCGCAACACGCTATCGGGGCTGGTCGGCAACATACGATCGGGGACCGGTCGGGGTGACGGACTCTCCGTCACCCTAATTAATACGGTATCTGGTAACTCCTCTCTTCAGGTTAGTTAACACGTCTGACGTAGGCTTAAGTGAGTTCAGTAAGTAGTTGGTTCAGATGCACCCCGCGGTGCTGGAGGGCCCCTAAGG
ATCTTCGTCTGACATTCGTCGTTCTAGCACCCCCTCGTTTCGGGTGGAATCTGGCCCGGAATTAGGAATACTGCGGTGTAGACGTTCTATTACAGCATATTTACGCAGTCGACAGTCTAACCCGGGTCCAGTTGATGCAAACGAAACAGAGGAACACGACGGTATTAAATTCTTCCCTTCGTTCATCACTGTTTTACCAGGTGCTGTATCACAGCATCGTGACGGCGTCCGGTGGTCGTCTCGAAAAACGGCAGTGCACAGCCAGGGACGGGTCCGTTTTGGATCGATTCGAGCAGGGAAGACGGTGTCGATCGGGCCATGATTTCGCGTCGACAGAGCGCGGAGTCACTTCGCGGGTGAATCCAAAGAGGGACTGGCGAGAACGAAGGGGGTAGGAGCGGTCGGCTTGTTGGCGGGCCCCAGAGGGAGTGAGTGGTGTTGGCACGACTTTAGTGTGAGTGTATTACCGTGAGAGCATATTACCGTGACTGCCGGGAAGCCCCCCACCCCTTCGTTTCAAGTGGAACTGTCCAACGGAGGGGTGGGGGGTGAGTCCCTCTTTCTAGAGGCGAATTTTTATTATACTGGGGGGAAAACAGTAACCGTAGCACTAGCAAATCCAATTATTTACTAGAGAAGTATTCTTTAGTTGCTAGATCGAACTAGATTAGCGTCTTTTAGCGTATCGAATTACTAGACTCTCGCTTTCTTCGAATTCAGCCGTCTCGCACTCGTCTCTCTCCACTCGAGTGGAAACTGAGGGGGAGATCCCTCACTCGGACCGTTCTCCATGGGTGGGGGATCGTTCGTCTCCAGTTGAAACAGAGGGGTGGGGGGTCTTGTCGATGCGAGGTAATTGCTACCCTGTCGAATGGGAGTTTGTATCACAATATCGCAACACGCTATCGGGGCTGGTCGGCAACATACGATCGGGGACCGGTCGGGGTGACGGACTCTCCGTCACCCTAATTAATACGGTATCTGGTAACTCCTCTCTTCAGGTTAGTTAACACGTCTGACGTAGGCTTAAGTGAGTTCAGTAAGTAGTTGGTTCAGATGCACCCCGCGGTGCTGGAGGGCCCCTAAGG
ATCTTCGTCTGACATTCGTCGTTCTAGCACCCCCTCGTTTCGGGTGGAATCTGGCCCGGAATTAGGAATACTGCGGTGTAGACGTTCTATTACAGCATATTTACGCAGTCGACAGTCTAACCCGGGTCCAGTTGATGCAAACGAAACAGAGGAACACGACGGTATTAAATTCTTCCCTTCGTTCATCACTGTTTTACCAGGTGCTGTATCACAGCATCGTGACGGCGTCCGGTGGTCGTCTCGAAAAACGGCAGTGCACAGCCAGGGACGGGTCCGTTTTGGATCGATTCGAGCAGGGAAGACGGTGTCGATCGGGCCATGATTTCGCGTCGACAGAGCGCGGAGTCACTTCGCGGGTGAATCCAAAGAGGGACTGGCGAGAACGAAGGGGGTAGGAGCGGTCGGCTTGTTGGCGGGCCCCAGAGGGAGTGAGTGGTGTTGGCACGACTTTAGTGTGAGTGTATTACCGTGAGAGCATATTACCGTGACTGCCGGGAAGCCCCCCACCCCTTCGTTTCAAGTGGAACTGTCCAACGGAGGGGTGGGGGGTGAGTCCCTCTTTCTAGAGGCGAATTTTTATTATACTGGGGGGAAAACAGTAACCGTAGCACTAGCAAATCCAATTATTTACTAGAGAAGTATTCTTTAGTTGCTAGATCGAACTAGATTAGCGTCTTTTAGCGTATCGAATTACTAGACTCTCGCTTTCTTCGAATTCAGCCGTCTCGCACTCGTCTCTCTCCACTCGAGTGGAAACTGAGGGGGAGATCCCTCACTCGGACCGTTCTCCATGGGTGGGGGATCGTTCGTCTCCAGTTGAAACAGAGGGGTGGGGGGTCTTGTCGATGCGAGGTAATTGCTACCCTGTCGAATGGGAGTTTGTATCACAATATCGCAACACGCTATCGGGGCTGGTCGGCAACATACGATCGGGGACCGGTCGGGGTGACGGACTCTCCGTCACCCTAATTAATACGGTATCTGGTAACTCCTCTCTTCAGGTTAGTTAACACGTCTGACGTAGGCTTAAGTGAGTTCAGTAAGTAGTTGGTTCAGATGCACCCCGCGGTGCTGGAGGGCCCCTAAGG
ORB     AT-rich region
The information of repeat sequences

Motif CYCNYTCGTBTCVAGTKGAANC

StartP-valueSite
8021.44e-10TGGGTGGGGGATCGTTCGTCTCCAGTTGAAACAGAGGGGTGG
7361.82e-10TCGCACTCGTCTCTCTCCACTCGAGTGGAAACTGAGGGGGAG
301.82e-10CGTTCTAGCACCCCCTCGTTTCGGGTGGAATCTGGCCCGGAA
5074.72e-10AAGCCCCCCACCCCTTCGTTTCAAGTGGAACTGTCCAACGGA
1171.21e-08AGTCGACAGTCTAACCCGGGTCCAGTTGATGCAAACGAAACA

Motif ATCACAGBATCGYGAC

StartP-valueSite
2081.49e-10CAGGTGCTGTATCACAGCATCGTGACGGCGTCCGGT
8842.10e-08GGGAGTTTGTATCACAATATCGCAACACGCTATCGG
4744.26e-07TTACCGTGAGAGCATATTACCGTGACTGCCGGGAAG
894.80e-07TAGACGTTCTATTACAGCATATTTACGCAGTCGACA
1457.07e-07ATGCAAACGAAACAGAGGAACACGACGGTATTAAAT

Motif TTDCTAGA

StartP-valueSite
6911.19e-05GCGTATCGAATTACTAGACTCTCGCTTT
6281.19e-05ATCCAATTATTTACTAGAGAAGTATTCT
5602.55e-05TGAGTCCCTCTTTCTAGAGGCGAATTTT
6504.14e-05TATTCTTTAGTTGCTAGATCGAACTAGA
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
aORI10010201 100.0 1088 0 0 1 1088 1 1088 0.0 2010
aORI10010160 91.892 74 6 0 1009 1082 79 6 1.08e-23 104
aORI10010160 91.525 59 5 0 122 180 1325 1267 5.06e-17 82
aORI10010315 89.61 77 8 0 1012 1088 77 1 5.03e-22 99
aORI10010315 93.75 64 2 2 123 185 1309 1247 6.5e-21 95
aORI10010393 91.429 70 5 1 117 185 104 173 6.5e-21 95
aORI10010150 94.915 59 3 0 122 180 1298 1240 2.34e-20 94
aORI10010171 89.855 69 7 0 1014 1082 74 6 3.02e-19 90
aORI10010171 90.909 66 3 3 122 185 846 782 3.91e-18 86
aORI10010219 91.525 59 5 0 122 180 131 73 5.06e-17 82
aORI10010237 86.486 74 9 1 1010 1083 77 5 1.82e-16 81
aORI10010237 89.655 58 6 0 123 180 1134 1077 8.47e-15 75
aORI10010372 83.544 79 11 2 1009 1085 1575 1653 3.05e-14 73
aORI10010127 100.0 30 0 0 498 527 233 262 3.07e-09 57
aORI10010149 100.0 28 0 0 500 527 1021 994 3.97e-08 53