DoriC

RefSeq

NZ_CP019327.1

DoriC accession number

aORI10010393

OriC length

1619 nt

OriC AT content

0.5034

The location of oriC region

2853540..2855158 nt

Browse in NCBI

OriC map

OriC sequences

CCGTCGTACACATACCCCCTTACTTCGAGTGGAATCCAAGACCCAAAATCAGGAATATTGTGGGGTAGATGGCCCATATTTGGTGATCTACTACCAAACGTTCCTAACCGGGGTCCAGTTGATGCAAACGAAACAGAGGAAAACCAGGCTATTAAATTCTTCCCTTCGCTTCAGGGCGAGGAACGAGAGAGTCGACGATTGTCGTCCGTTGAGCGCTAATACGCAAAACCTGCGACCAGCCGAAGACAGACCGACCCATCAGAACCACCTAACACGTCCGTTTCAGGTCGATTGCACACGAACAGTGTTCGACGATCGATGCACTCCGCTTGCACTGTCTCGAGTAGTAGTAGAACGTTACTCGAGTCCCGTGTTTGATTGTGCTAACATCCAACGCAGTGGTGTAACTCACATACCGAGATTGGAGAGAGACTAGCTTGTGGATCGAGCACCGTGCGTATCACACTGTTCTAGTACCAATAAGGGCAATTAGATATTAGAATGAAAGTTCTAGGAATGCTGACGGAGTCTACTCGAGCGGCGAATAAATCGATTTGATTGGACTGTCGAGGACGGAGGGAAAATTCCGTTGGGCGTCCGATAACGGCCGTGGAACCCCCTCTAAACGAGATTGGTTCGTTGTCGGAACCAGTTACGGGAGTGAGTGAAGCCCCCCACCCCTTCGTTTCAGGTGGAGCGCGCCGAAGGAGGGAGGGGGTCTCGAAAGGTCTTCTAAACGGGAGGGTTTTAAGTAGTTAGGTGAAAAACACGGTCCGTAGCACTAGCAAAAACAGATTTTTACTAGATGTATTGGTATTAGTTACTAGACCCTGCTAGAACGGCGTCTCTAGACTGCATGAATTACTAGACTAGTTCTTCTCCACCAAATCACTCCTCTAGAGGCTTCACGTCCGGAACATCAGCAGTATCGTCGTTTTCTCCATCCGGAAGCGACCAGATTCGACGAACGATCCCCCACAGGGGGTCGGACGTCTCCAGTCGAAACGAAGGGGTGGGGGTGATCCCTCTCGAACATTCAGTACCGAGATCCAACCCAGTATATCGATTTTCATGTTGCATGCATTCAATTCCCATGTTGCATGCTTTCAATATTCATGGGTCGGCACGTTATCTGTTCGTAGTATTCGTGGGATATATTCTTAGCATCCATGCCCTGTCATGTCGAATGTTCCTGGTAGTCGTGGGGATGTATCCAGTTTACACGACCGTAACTCCCAGACACGGATCGTTGCTGAACGAAGGTAGCTTCTGCTCTGGACCAGGCGAGCTCCAATCTATCCGAGGTATTCCGTGCTTGTTTCTATCATCGCGCACGAATCGTGACGACGAATGGTGCGCACAAATTGTGGCGACGAACGGTGAGGAGTGACTGCAGTAGCAGAGTGTGAAAGAACGGTGAGTAGCGACTAGAGTAATAGAACTAGAGTGTGAAGGTTGCTTCAACGCATCACTCAACTCTCGAGAATCACATCACGCTACACTGGTACGGTGAATTGTCTATCCGTCTGACGTAGGCTTAAGTAGATTCAGTTTGTAGTACGCGCAGATGCACCCCGCGGTCGCGCAACTGCCACCCGCGGTGCTGGAGGGCCCCAAGG

ORB AT-rich region

The information of repeat sequences

Motif TTTCAKGTBGMATGC

Start	P-value		Site
1068	3.17e-09	GTATATCGAT	TTTCATGTTGCATGC	ATTCAATTCC
281	3.05e-08	AACACGTCCG	TTTCAGGTCGATTGC	ACACGAACAG
1176	1.01e-07	ATCCATGCCC	TGTCATGTCGAATGT	TCCTGGTAGT
1090	1.34e-07	TGCATTCAAT	TCCCATGTTGCATGC	TTTCAATATT
686	2.78e-07	CACCCCTTCG	TTTCAGGTGGAGCGC	GCCGAAGGAG

Motif CGACGAACGRT

Start	P-value		Site
962	2.63e-07	CGACCAGATT	CGACGAACGAT	CCCCCACAGG
1371	5.31e-07	CAAATTGTGG	CGACGAACGGT	GAGGAGTGAC
310	7.78e-07	GAACAGTGTT	CGACGATCGAT	GCACTCCGCT
1345	2.12e-06	CGAATCGTGA	CGACGAATGGT	GCGCACAAAT
177	4.35e-06	CGCTTCAGGG	CGAGGAACGAG	AGAGTCGACG

Motif SGNBGTMTCCAGTCTAHACGA

Start	P-value		Site
988	3.74e-11	ACAGGGGGTC	GGACGTCTCCAGTCGAAACGA	AGGGGTGGGG
1206	2.60e-10	GTAGTCGTGG	GGATGTATCCAGTTTACACGA	CCGTAACTCC
1283	2.34e-08	CTCTGGACCA	GGCGAGCTCCAATCTATCCGA	GGTATTCCGT
609	2.50e-08	CGATAACGGC	CGTGGAACCCCCTCTAAACGA	GATTGGTTCG
840	2.97e-08	CCTGCTAGAA	CGGCGTCTCTAGACTGCATGA	ATTACTAGAC

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010393	100.0	1619	0	0	1	1619	1	1619	0.0	2990
aORI10010150	77.833	203	41	4	669	869	803	603	4.46e-29	122
aORI10010150	78.212	179	26	9	1	173	1405	1234	5.82e-23	102
aORI10010201	91.429	70	5	1	104	173	117	185	9.73e-21	95
aORI10010315	94.828	58	3	0	1524	1581	76	19	1.26e-19	92
aORI10010315	89.062	64	4	3	111	173	1308	1247	3.53e-15	77
aORI10010237	92.982	57	4	0	111	167	1133	1077	2.11e-17	84
aORI10010219	92.982	57	4	0	111	167	129	73	2.11e-17	84
aORI10010171	88.06	67	7	1	111	176	844	778	9.8e-16	79
aORI10010171	88.889	54	3	3	667	719	530	479	2.74e-11	64
aORI10010160	88.889	63	7	0	114	176	1320	1258	9.8e-16	79
aORI10010313	96.875	32	1	0	669	700	221	252	1.65e-08	55