DoriC

RefSeq

NZ_CP011947.1

DoriC accession number

aORI10010300

OriC length

1629 nt

OriC AT content

0.5813

The location of oriC region

2944020..257 nt

Browse in NCBI

OriC map

OriC sequences

CCTGGGCCTCCCGCACCTCCCGAACGCGTCGTGGAGGGCGTATGGAGGTATCACCCAACCGGACTCACTTAAGCACTACGTCAGACACCAGTCACGTGGGAGACAAGACGACAGAAAGGAGCGTCGTGGACGAGGGTCAGTTCGATAAAACGAGGTCGGGCAACGAGAAACGAGAGGCGAGCGCTTGTTCACCGAGTATAATGTAACTGATACTAAAACGGTTCGAGCCGAATCCGTATTGCAGTTTATGGTTACTTTGCGCGCACACGTGCGTAACTTGGACATACGACGAACGGTGAATCTCCTGAATGTGCCGAACAGTTCCTGAAAACACCGAGCCGGTCTCTCCCCCGATCTGTCGTCACCTTAGTCTCCGCGGACAAGACACGGGGTTGACACTATTTGGTAGACGCGAAACGGTCGGGGGAACACCCCCACCCCTTCGTTTCGGGTGGAACGGCCCGAAGGGGTGGGTGGGGGGAGACCGCTAGACGGCGGTGGGACGTTAATTCTATTCTAGGGGAGTACAATAATATCTCTTTTTGCCCCAGTACGGTTATGGTATGACAATATGAGTAATAAAACTATCTGTATCTAAAGACCACCGAGACCCCCTCCCCACCCTCTCACGCCTCCACCCGAAACGAAGGGGTGTGGGGGATACGAGACCCAGGGGTTTCCCGTCGAACTGGAGAACACCCACTTAATTGCAGAGGAAACCAAGGGGTTAGGACGGTCGCTAAAATCCTCAGACCCTTGATTTCTCCGGAAGCGTGTTTTGCCCGTTTCCACACGAAACGAAGGGGTCTCGGGGACCGATTTTTCTCGTCGGACGTCCACTCAACTCCGAGTTCCACTCCACCCACGCGGACCGGTGGGTTTCGCGTCGACCGGGAGTCCGGTGTGGTGCCGCCCGGGTGTCCGGTGCGCAACTGCCGTTCGTCGAAATCCACCACTATCGCTCGGAGTCTCGACGCGTCCCGCGGTTCGATTCGACAGAGTGCGATTGTTCGAACTGATCCGTTTCACCTCGACGCCACTGTCCCCAATTCCCTCCGTCCCAGCCGGCCGACTCATTCGATCAGCTCTATCCGACTCCCGACCCCATCCGACTACGTTCTCCGATCGACTCGAACTACTCGTCTCATCCGAACCCTTCCTCACCCATCCCTGATTCCCGGCCGTGGTTTTGACTCCGAGACGTTCCGCTCTCGGTGTCGATACGACCTGCCGACCCCGTCACGACCTGCCGACCCCACCGACTGACCCCCGGCTGACCCTCAGCTGACTCCCGACTTCCAACCGACGACCCCAATCGACTGACGAGTGACGACCTCGACCGACTGACGACTCCAACCGGCGCTTCCGGACAGTGGTCGCGAGGAGTCTCCGTCCCCCGAGCGAATCGAGCGCTCGTGTTGAAACGGTCCCGTCCGGCCGAGTTCCGGTCGAACGACGGCAGACGAGTCGGAGAAGTAAGATTTTTGTACCGACTGTTCGTTTGGTTCCTTTGCATCATCTGGAATCGCCTTCTTCGGCGTGACGCGCAGATGCCGACTACCACCGGCCTCACGCACCGTATGCGCCGCTGCGGGCGACTATTCCACTTGAAACAAAGGGGTATTCACG

ORB AT-rich region

The information of repeat sequences

Motif TSCACACGAAACVAAGGGGT

Start	P-value		Site
788	8.97e-13	TTTGCCCGTT	TCCACACGAAACGAAGGGGT	CTCGGGGACC
634	2.62e-11	CTCTCACGCC	TCCACCCGAAACGAAGGGGT	GTGGGGGATA
1603	7.89e-11	GGGCGACTAT	TCCACTTGAAACAAAGGGGT	ATTCACG
709	7.89e-11	CCCACTTAAT	TGCAGAGGAAACCAAGGGGT	TAGGACGGTC
658	2.09e-09	AGGGGTGTGG	GGGATACGAGACCCAGGGGT	TTCCCGTCGA

Motif CGACYBVCGRCYCCAWYCGAC

Start	P-value		Site
1300	2.12e-10	TCCCGACTTC	CAACCGACGACCCCAATCGAC	TGACGAGTGA
1341	4.51e-10	CGACCTCGAC	CGACTGACGACTCCAACCGGC	GCTTCCGGAC
1093	5.04e-10	CAGCTCTATC	CGACTCCCGACCCCATCCGAC	TACGTTCTCC
977	1.25e-08	AGTCTCGACG	CGTCCCGCGGTTCGATTCGAC	AGAGTGCGAT
1243	1.99e-08	GACCCCGTCA	CGACCTGCCGACCCCACCGAC	TGACCCCCGG

Motif TTCSVGTCGAACKR

Start	P-value		Site
1443	5.86e-08	TCCGGCCGAG	TTCCGGTCGAACGA	CGGCAGACGA
678	7.35e-08	ACCCAGGGGT	TTCCCGTCGAACTG	GAGAACACCC
447	9.15e-08	ACCCCTTCGT	TTCGGGTGGAACGG	CCCGAAGGGG
881	2.36e-07	ACCGGTGGGT	TTCGCGTCGACCGG	GAGTCCGGTG
1125	9.00e-07	ACGTTCTCCG	ATCGACTCGAACTA	CTCGTCTCAT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010300	100.0	1629	0	0	1	1629	1	1629	0.0	3009
aORI10010162	93.548	217	14	0	1413	1629	897	1113	0.0	324
aORI10010162	81.605	299	45	10	425	719	190	482	0.0	239
aORI10010216	82.063	223	32	7	1411	1629	1417	1635	0.0	183
aORI10010216	94.017	117	7	0	1	117	1	117	1.4013e-45	178
aORI10010169	97.436	39	1	0	420	458	526	564	2.13e-12	68
aORI10010312	84.615	65	8	2	419	482	531	594	2.76e-11	64
aORI10010237	88.889	54	3	2	432	483	674	622	2.76e-11	64
aORI10010082	87.5	56	5	2	427	481	581	527	2.76e-11	64