DoriC

RefSeq

NZ_CP007055.1

DoriC accession number

aORI10010372

OriC length

1655 nt

OriC AT content

0.4937

The location of oriC region

2706894..2708548 nt

Browse in NCBI

OriC map

OriC sequences

GTCAGGGCCTCCGAGTTCGACGTTTCGGTCCGAATCCGTCATATCTAATTCGTCGTCAGACATTCGTCGTGCGTACACCCCGTCATTTCGAGTGGAACGTGACTCGAGCGCGAGCTATTGTGGCCCGTACGGGCCTGAAAGAAGCCATTCAAGCGTACGAGTTCGCGATCGGAGTCCAGTTGATGCAAACGAACCAGAGGAACACCTAGCTATTAAATTCTTCCCTTCTGATTCCAAGAATTGTCGTTTCGCAGTTATTTCGAGAACGGCCAACGTACTCAGAAGGACACTTCCTATTCAGGACGGATAGTATCCAGAAGGGGCAGATTCGTATCCAAGAGGAATAGTATACTTGTGTCGTGCGTGATGTTCCGTACGTGCGTGATGTTGCTTTTGGTGGTGTTGGCTATAGTGCCGTAGAAAGTTTCGAGCATGCTGCTGAACCACGGGTACCGCACGGTTCTCGAGAGAGTGATCGAACTTCGTTCAGGACGCCGTTCCATCAGAAGTATTCCACGAGAATCGGGGGTAGAGAACCGGGAGGACGATAGTTTTACGCGAGCGGCAGGTTCGACGACTTTCTTCGATATTGGTTGCAGTTGAACATACTACTAATAGCCGAGCATTGGCGGGGTGTCTCCAATTGATGCGAACGATTGTTGATTTTCGCGGTGGAAGTGCGATATGATTGCTGTCGGAGATGATACATAGACAGTAATCGGGCTGTAGTGAACTGTATATGGGTTGTGGTGGGCTGTATGCGGGCTGTGGTAGGCTGTATTCGAGATGTAGTGGACTGTATAGCTGATCTAGTTGCGGAGTTGATACCATGGAAGTTGTCGTGGAACCCCCCACCCCTTCGTTTCAGGTGGAGAAGGTTACGAGAGGGGGTAGGGTTGCGAGAGTGTTTTATTATGGGAAGATTCATATTGATTGCTTCGAAACAGTATCCGTAGAACTAGCAAAACCAATAGATTACTAGAGTTAGATTAAGTTATCCTAGTCGTTACTAGAACGGCGCGTCTATAGCAACTCAGTTACTAGAACTCTGAATCTCCGCTCTATCCCGTCACGAAGCGGTCTACCCGTTCTTTTCGTCTTTTAGAGCGACGTTCTTTCTCATCCTACCCGATTTTCCCCACTTTGGCACCCCCACCACTTCTCCATCTCCAGTCGAAACAAAGGGGTGGGGGATCAGCCGGAAATACTAGTATGGTTCTAGTACTCATACAATTACCTCGCTACCCGAGTACTCGTGACCTTCCCAGTCAACCACAGTCCTTCTCGTTTTCACGGGTCTGGAACCATATCGACTCTCGAGCGAGAGATATTCGTCTCCGTTCTCGATTTCACGCACCTCTCTTTCGAGTGGGTCTATTCCGACTGTTTCGGGGGGTCTACTCCATCTGTTTCGAGTGGATTTATTCCGACTGTGTGCTCGAGTTAGCACGTTAGGATGTCGATCAAGAAATTCTCCTTCGTGTGGACTTATCCGGACACTCTCCTTTCGTCTGTTTTCCGGTCCCGCATCCAACAGTATCGCAGATCGTTACTCTCCTTGTTGTTGGATATTCAATACGTCTGACGTAGGCTTAAGTGAGTTCAGTTCCGTAGTACGCGCAGATGCACCCATATGGTGCTGGAGGCCCCCTAGG

ORB AT-rich region

The information of repeat sequences

Motif CGRGCTGTDGTGGVCTGTAT

Start	P-value		Site
720	3.67e-11	AGACAGTAAT	CGGGCTGTAGTGAACTGTAT	ATGGGTTGTG
783	4.76e-11	AGGCTGTATT	CGAGATGTAGTGGACTGTAT	AGCTGATCTA
762	8.85e-11	GGGCTGTATG	CGGGCTGTGGTAGGCTGTAT	TCGAGATGTA
741	6.02e-10	GAACTGTATA	TGGGTTGTGGTGGGCTGTAT	GCGGGCTGTG
111	2.59e-09	GACTCGAGCG	CGAGCTATTGTGGCCCGTAC	GGGCCTGAAA

Motif TCWHVHMVTTCTCTYKCGWSTGGANYTATHCCGACTBT

Start	P-value		Site
1350	8.66e-17	GTTCTCGATT	TCACGCACCTCTCTTTCGAGTGGGTCTATTCCGACTGT	TTCGGGGGGT
1397	1.19e-16	TTTCGGGGGG	TCTACTCCATCTGTTTCGAGTGGATTTATTCCGACTGT	GTGCTCGAGT
1464	6.89e-16	AGGATGTCGA	TCAAGAAATTCTCCTTCGTGTGGACTTATCCGGACACT	CTCCTTTCGT
1280	1.26e-12	CAACCACAGT	CCTTCTCGTTTTCACGGGTCTGGAACCATATCGACTCT	CGAGCGAGAG
1226	5.77e-12	GTTCTAGTAC	TCATACAATTACCTCGCTACCCGAGTACTCGTGACCTT	CCCAGTCAAC

Motif CCBHCCACYYCKHCRTTTCVRGTSGAA

Start	P-value		Site
848	2.55e-13	TGTCGTGGAA	CCCCCCACCCCTTCGTTTCAGGTGGAG	AAGGTTACGA
1152	1.06e-12	CTTTGGCACC	CCCACCACTTCTCCATCTCCAGTCGAA	ACAAAGGGGT
71	3.26e-12	CATTCGTCGT	GCGTACACCCCGTCATTTCGAGTGGAA	CGTGACTCGA
8	2.65e-11	GTCAGGG	CCTCCGAGTTCGACGTTTCGGTCCGAA	TCCGTCATAT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010372	100.0	1655	0	0	1	1655	1	1655	0.0	3057
aORI10010237	88.732	71	6	2	1580	1650	73	5	5.99e-18	86
aORI10010201	83.544	79	11	2	1575	1653	1009	1085	4.66e-14	73
aORI10010275	100.0	29	0	0	845	873	654	626	1.69e-08	55
aORI10010144	100.0	28	0	0	1167	1194	382	355	6.07e-08	53