RefSeq NC_018224.1
DoriC accession number aORI10010219
OriC length 237 nt
OriC AT content 0.4051
The location of oriC region 435362..435598 nt
Browse in NCBI
OriC map
OriC sequences
CGACTCGAAACGCAGTCGCGACGGGTCAACTGGGCCCGCAACGGCCGCCCGTTTCGATCGGAAACGAGGGGGGAAGGGAAGACTTTATTACCATGGTTTTCCTCTGTTTCGTTTGCATCAACTGGACCCGGAACGGGTATCCGGAACGGTGAATTCGGCCACGGAGGCCATCACACCGCTATATTCCCGCTCCCTGGTTCGGCGTTCCACCCGAAATAAGGGGGTGCTGCACGACGG
CGACTCGAAACGCAGTCGCGACGGGTCAACTGGGCCCGCAACGGCCGCCCGTTTCGATCGGAAACGAGGGGGGAAGGGAAGACTTTATTACCATGGTTTTCCTCTGTTTCGTTTGCATCAACTGGACCCGGAACGGGTATCCGGAACGGTGAATTCGGCCACGGAGGCCATCACACCGCTATATTCCCGCTCCCTGGTTCGGCGTTCCACCCGAAATAAGGGGGTGCTGCACGACGG
CGACTCGAAACGCAGTCGCGACGGGTCAACTGGGCCCGCAACGGCCGCCCGTTTCGATCGGAAACGAGGGGGGAAGGGAAGACTTTATTACCATGGTTTTCCTCTGTTTCGTTTGCATCAACTGGACCCGGAACGGGTATCCGGAACGGTGAATTCGGCCACGGAGGCCATCACACCGCTATATTCCCGCTCCCTGGTTCGGCGTTCCACCCGAAATAAGGGGGTGCTGCACGACGG
ORB     AT-rich region
The information of repeat sequences

Motif GAYCCGVAACG

StartP-valueSite
1251.50e-06GCATCAACTGGACCCGGAACGGGTATCCGGA
23.17e-06CGACTCGAAACGCAGTCGCGAC
1383.76e-06CCGGAACGGGTATCCGGAACGGTGAATTCGG
565.01e-06CGCCCGTTTCGATCGGAAACGAGGGGGGAAG
331.48e-05GGGTCAACTGGGCCCGCAACGGCCGCCCGTT

Motif CTWTATT

StartP-valueSite
831.87e-05GAAGGGAAGACTTTATTACCATGGTTT
1793.82e-05CATCACACCGCTATATTCCCGCTCCCT

Motif TTTCSTYT

StartP-valueSite
1071.07e-05TTTTCCTCTGTTTCGTTTGCATCAACTG
981.83e-05TTACCATGGTTTTCCTCTGTTTCGTTTG
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
aORI10010219 100.0 237 0 0 1 237 1 237 0.0 438
aORI10010171 79.29 169 29 6 73 237 788 954 3.69e-27 113
aORI10010150 92.308 65 5 0 68 132 1235 1299 4.81e-21 94
aORI10010237 88.0 75 9 0 70 144 1074 1148 6.22e-20 90
aORI10010393 92.982 57 4 0 73 129 167 111 2.89e-18 84
aORI10010160 76.19 168 34 6 73 236 1267 1432 2.89e-18 84
aORI10010201 91.525 59 5 0 73 131 180 122 1.04e-17 82
aORI10010315 86.207 58 8 0 73 130 1252 1309 3.77e-12 64