DoriC

RefSeq

NC_013743.1

DoriC accession number

aORI10010150

OriC length

1405 nt

OriC AT content

0.4619

The location of oriC region

3887788..154 nt

Browse in NCBI

OriC map

OriC sequences

CTGTGGGGCCCTCCAGCACCGCGGGGTGGTGCATCTGCGCGTACTACAAACCGAACCCACTTAAGCCTACGTCAGACGTGTAGACTATTCAACGAAACGGAGTTATACGGACAGATGGGGAGATCATACTAGCGGAACCGATAAACGTACTAGTAGGATCGATAAATGGCTACCTCGACCGATAAATAGTTGCCTCGACTGATCGATGGCTGCCTCGAGTCGAAGCAGGGGGTCGATCGGAGCCGGGACTGTGACTACGGATCAGTCGGATGGCGACTCGAGAACCGCGACGGAGCATTGCATACAGTGATAGACTGACACAGCGAATACGCGTCAGTTATCGAGTGTGTGTTGATCGGTACCAGATATCACGATATGAGGGACGCTATAGATCGGCATACTAGTGTGAGTTCAAACATCATACTAGGAACGTACGTAGATCCGATGGAAGCCCCCCACCCCTTCGTTTCGGGTGGAGAGTCGCGATCGTGGGGGTGGGGGAGTGGTATTGTTCGGGTGGAAAGACTCTGTAGCGACCCCGAGATCCCGTTCAAACGGACAGTACAGACCGTCAACCGGTGAGTTTCGGGTCGAACGACGTCTCTAGTAACTCGAGCCGTCTAGAGAGGCTGTTCTAGTAGGAACTAGCAACTAGAACCAACATCTCTAGTAAAAATCTAGTTTTGCTAGTGCTACGGACCGAGTTTCTGGCCCATGGAAATAAAGGTTCCCGTTCTAGAGACCCCCCCTCCCCCCACCCCCTCCTTCGTAGCGTTCCACCTGAAACGAAGGGGTGGGGGGCTAGGTTGATCTCACCCTTCGTATCCTGTTCCATGTTACCTCGAATCTCACTCCTTCGATGTCTGACAACTCGTGGCACACTCGCTCTCGAGAACTACTCCGAGTGCTGACCGAAATTTCTCGCCCCTCACTTACTATCATACCTCTTATATTTATCGCTGGTGTCCTCGAGCAACAGCCCATACCCGACTCGCTTCGAGGTCGAGTGACCGAACAATAATTGCGGTTGGAGACGACTACTGAGTGTTCCTGACCTAGTCGATCGCGTAGGTGTCGATCTCGCACACGCATCGCGAGCGCGCGTAATGATCCCTTATCGACCCGAAACGGACGTCTCTCACCCCGTCGTCATCGGTCTCGTGCCTCGATGGTCACTGGACCTTTCGAATAGGCCGTCAGACGGCCGATACCGCCGATCGTGCCAAACCCTTGTGGAGGGAAGGGAAGAATTTAATACCGTGGTTTTCCTCTGTTTCGTTTGCATCAACTGGACTCGGACCAGGGAGGCGAACGAGTGGGAGACCCTATTCGCCCCATCTACTGCGTGATATTCCTGCTTTCGGGTCCGAATTCCACTCGAAACGAGGGGGTATGTGTACGACGG

ORB AT-rich region

The information of repeat sequences

Motif TTTCGGGTSGARAGWC

Start	P-value		Site
584	2.49e-09	AACCGGTGAG	TTTCGGGTCGAACGAC	GTCTCTAGTA
467	2.74e-09	CACCCCTTCG	TTTCGGGTGGAGAGTC	GCGATCGTGG
511	9.77e-09	GAGTGGTATT	GTTCGGGTGGAAAGAC	TCTGTAGCGA
1359	1.47e-07	ATATTCCTGC	TTTCGGGTCCGAATTC	CACTCGAAAC
996	3.08e-07	CCCGACTCGC	TTCGAGGTCGAGTGAC	CGAACAATAA

Motif TRCCTCGA

Start	P-value		Site
1162	1.74e-05	ATCGGTCTCG	TGCCTCGA	TGGTCACTGG
211	1.74e-05	GATCGATGGC	TGCCTCGA	GTCGAAGCAG
191	1.74e-05	GATAAATAGT	TGCCTCGA	CTGATCGATG
838	3.24e-05	TGTTCCATGT	TACCTCGA	ATCTCACTCC
171	3.24e-05	GATAAATGGC	TACCTCGA	CCGATAAATA

Motif CRTACTAG

Start	P-value		Site
420	1.29e-05	GTTCAAACAT	CATACTAG	GAACGTACGT
397	1.29e-05	TATAGATCGG	CATACTAG	TGTGAGTTCA
125	1.29e-05	ATGGGGAGAT	CATACTAG	CGGAACCGAT
146	2.78e-05	AACCGATAAA	CGTACTAG	TAGGATCGAT
732	5.54e-05	TAAAGGTTCC	CGTTCTAG	AGACCCCCCC

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010150	100.0	1405	0	0	1	1405	1	1405	0.0	2595
aORI10010393	77.833	203	41	4	603	803	869	669	3.87e-29	122
aORI10010393	78.613	173	24	9	1240	1405	167	1	5.04e-23	102
aORI10010171	78.161	174	23	13	1240	1405	788	954	2.34e-21	97
aORI10010171	74.879	207	41	8	603	803	327	528	1.82e-17	84
aORI10010219	92.308	65	5	0	1235	1299	68	132	3.03e-20	94
aORI10010201	94.915	59	3	0	1240	1298	180	122	3.03e-20	94
aORI10010237	92.982	57	4	0	1238	1294	1075	1131	1.82e-17	84
aORI10010315	76.163	172	30	10	1240	1405	1252	1418	2.36e-16	81
aORI10010160	86.301	73	9	1	1233	1305	1260	1331	8.49e-16	79
aORI10010216	92.157	51	2	2	751	800	501	452	1.42e-13	71
aORI10010162	90.385	52	5	0	749	800	248	197	5.11e-13	69
aORI10010313	94.737	38	2	0	772	809	252	215	3.08e-10	60
aORI10010275	100.0	29	0	0	773	801	623	651	1.43e-08	55