DoriC

RefSeq

NZ_CP019067.1

DoriC accession number

aORI10010312

OriC length

1319 nt

OriC AT content

0.5686

The location of oriC region

1708902..1710220 nt

Browse in NCBI

OriC map

OriC sequences

AAACGTACCCCTCTGTTTCGGGTGGAGAGGAACACCACGCGTCCCAGAAACGGCCCGTGAGTCGTCGAAGATCCGCTGTAGGTGGAAATCGGGCTTTCCGAGGACGTCCAGTTGAACCACAAGAACCCGTGGTTGACGAGCTATTAAATATTTCGATCGTTGAATGATCAATAGTCCACAGTATGGAGCCGTTGCATCCGATATCAGACCGTAGAGTCGGCGTTCTCGGCGATCGACGAGAGTGGGAAGACTCCGCTGACACCGGGGAACACCCCCGTTTCAGGTGTAACGGAGAATAGATCCGTCTCACCCGGGAAACGATGTGAACGTGACGTGCAATTCGAGCCAGAGAGGAGAGCAGTAGTTCCGGCCAATAGCGTCAACGGAATCGAGAGATCTAGTTGACGTTTTCGAGTGAGCGGATCGACGAGAGAGCAAAAGACGAGAGAGCAGAACCGGAACACCAGCTGGGATCGTCGTAGGTTGGAGAACGGTTCCGGTGGGGAGAGCGGTTCGACGGGAAAGGATGGGGTGGGGAGGGACCCCCCCACCCCTTCGTTTCGGGTGGAACGGTGTGGAGGAGGGGTGGGGGGACCCCCTCTCTAGAGAGGGGAAGCATTAAGTAACCACTCTAACAATCAAACCCGTAGAACACCCAAACACCCTTTCTTCTAGTGGAGCTAGTATGTTGTGTGGCTAGAGTCAGCGAAATCAGCTAGACTAGTGGAAAGTATGCCTAGAGGCACGCTCCCGTGGAGTAACCTCCATATCCATCGACGACTCGCTGCTCACCCCCACCCCGGCATTCCTGCCGTTCCACTCGAAACAAGGGGGTGGGGGGCTTCCATCCCGGTCAGTCCAGATCAGGTTTTCACCGCACTGTGGTAACTGGTACCGTGGCATTCCCATTCGTCATCTACACCCTGCTCCGTTTCGGGTCCAGCCCGATCATCCGCCAATACTTTCCCGTCGACCCTCCCCCGTCAACACTTTCCCGTCGACACTCTCCCGCCGACCCTCTCCTGTCGACACTCTCCCATCGACCCTCTCCTGTCGACACTCTCCCATCGACACCTTCCCGTCGACTACCTCTGCCCGGCTCACGGGACCGTTTCTTCCGTTGGTTGCTTTCCGACACGTCCAGCGGACGTGCCATATCCTGCCCCGTCCATCGTTTCACCCCATCGTTTCCCCACGAACCGGCCACTCTCCCACCGAATTAGTATCGGAGTATTTATGTATGTCTGACGTACACTTAAGTCGATTCGGTCGGGAAGTACCCGCAGAAGCTCTCTCACGGAGAGAGCGGGAGGCCCAGG

ORB AT-rich region

The information of repeat sequences

Motif CTYTCCYGTCGACACTCTCCC

Start	P-value		Site
1046	1.35e-12	CCCATCGACC	CTCTCCTGTCGACACTCTCCC	ATCGACACCT
1018	1.35e-12	CCCGCCGACC	CTCTCCTGTCGACACTCTCCC	ATCGACCCTC
990	1.35e-12	CCCGTCAACA	CTTTCCCGTCGACACTCTCCC	GCCGACCCTC
962	1.04e-11	TCCGCCAATA	CTTTCCCGTCGACCCTCCCCC	GTCAACACTT

Motif ACHCCYYYGTTTCGGGTGGARC

Start	P-value		Site
550	1.17e-12	GGACCCCCCC	ACCCCTTCGTTTCGGGTGGAAC	GGTGTGGAGG
7	9.70e-12	AAACGT	ACCCCTCTGTTTCGGGTGGAGA	GGAACACCAC
269	6.91e-11	ACACCGGGGA	ACACCCCCGTTTCAGGTGTAAC	GGAGAATAGA
660	1.15e-09	GAACACCCAA	ACACCCTTTCTTCTAGTGGAGC	TAGTATGTTG
923	1.42e-09	TCATCTACAC	CCTGCTCCGTTTCGGGTCCAGC	CCGATCATCC

Motif TAGATCCGNCKTASNYGGARAWCGRTBHGDNYGGGRAGDNCCVKYHGA

Start	P-value		Site
297	2.73e-17	TAACGGAGAA	TAGATCCGTCTCACCCGGGAAACGATGTGAACGTGACGTGCAATTCGA	GCCAGAGAGG
212	4.83e-16	TATCAGACCG	TAGAGTCGGCGTTCTCGGCGATCGACGAGAGTGGGAAGACTCCGCTGA	CACCGGGGAA
1240	6.27e-16	AGTATTTATG	TATGTCTGACGTACACTTAAGTCGATTCGGTCGGGAAGTACCCGCAGA	AGCTCTCTCA
68	1.81e-15	TGAGTCGTCG	AAGATCCGCTGTAGGTGGAAATCGGGCTTTCCGAGGACGTCCAGTTGA	ACCACAAGAA
470	1.59e-14	AACACCAGCT	GGGATCGTCGTAGGTTGGAGAACGGTTCCGGTGGGGAGAGCGGTTCGA	CGGGAAAGGA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010312	100.0	1319	0	0	1	1319	1	1319	0.0	2436
aORI10010312	85.593	118	12	5	981	1097	953	1066	4.69e-28	119
aORI10010312	85.593	118	12	5	953	1066	981	1097	4.69e-28	119