DoriC

RefSeq

NC_013202.1

DoriC accession number

aORI10010082

OriC length

1065 nt

OriC AT content

0.43

The location of oriC region

783884..784948 nt

Browse in NCBI

OriC map

OriC sequences

CCTCGTTCCTCCCGCCCGAACGTCCGTATTCGGGGGCTTGAGCGTAGTAGAAAGGCGAATTCACTTAAGGCTACGTCAGACAACCATACCCGAATTGATAGTACGTCGAAAGATACAGCGCGGAAACCTGTCGAGAAAACGCGACGGGGACGAGATAGGAAAGTTGCGGGACGATAAGTCAGCCTGGCGGGACGGTAAGCCAACCCGAGGGAGGAGTGGAGAACGGTAACAATCTGGGAGGGACTTCGAGGGGGAGCACAACACCCCCACCCCTTCGTTTCGACTGGAACGCCATAACCCCTCGTGGGGACCAGCGGGAGAGACGGGACTCGCGCGGGAAACCTACGGGTGGTTCGCGCGGGAGGTTTCGTCTGGAACGCTACTAGAGAGACGTGAGAACGTGTAGAACAGCGTCTAGAATACTAGATACGACTAATTACTTGTCTCTGCTTCTAGTGCGGCTTTGGTTTTCACGTATCATACATAAGTCTTCCCTCATCTAGTGAGACCTCGACAGACTGCCGTACCCCCCACCACCCTCTTCAACGCGTTCCACCCGAAACGAAGGGGTGGGGGGGTTCGTGAACTCCCTTCCGAAATCCCACTCGAAGCTGTTCGTCTCCTGCTAGCACCTCTCTCACGTCGACTCTCGAATACACCCGACAGTACAGACCCCCGTCCGTTTCTGGTCCGCCCGCTCCCGCCCGCCGACCGTTCTCACTGTCGACACTCTCCTCACTGTCGAGTGTGAATTCGTCACGAACGTCTCCGTCTCGGGGGAATGCCTGCAGGACCGGACAGCTATCCACATCTCGAAGGTACGGTGAAGCTGCGGTCAGTAACGACAGAGACACGAATCGGGGACCCGACGTAGGGCTGGATCGACAGGAGTCTCCGTTCCGACCGAAATGTTTAATATCGAGTCACCCACGGGTTCTTGTGGTTCAACTGGACTCGCGCCGTTCGGTGAAATTCGCGTACAACGTCTTTCCGAGCGGTCTCAGTCGCGATTCCACACTGCGCACCGGTCTTTCCACCTGAAACGAGGGGGTTGTCACCACGACT

ORB AT-rich region

The information of repeat sequences

Motif CGTTYCRHCYGRAACG

Start	P-value		Site
276	3.43e-09	CCCACCCCTT	CGTTTCGACTGGAACG	CCATAACCCC
549	8.53e-09	CTCTTCAACG	CGTTCCACCCGAAACG	AAGGGGTGGG
1030	1.61e-08	GCGCACCGGT	CTTTCCACCTGAAACG	AGGGGGTTGT
896	1.89e-08	CAGGAGTCTC	CGTTCCGACCGAAATG	TTTAATATCG
364	4.27e-08	TCGCGCGGGA	GGTTTCGTCTGGAACG	CTACTAGAGA

Motif TMVWBACBHNYBTCHBYDTCTAGTGNG

Start	P-value		Site
434	6.33e-13	TAGATACGAC	TAATTACTTGTCTCTGCTTCTAGTGCG	GCTTTGGTTT
724	3.10e-10	GTTCTCACTG	TCGACACTCTCCTCACTGTCGAGTGTG	AATTCGTCAC
667	5.12e-10	CACCCGACAG	TACAGACCCCCGTCCGTTTCTGGTCCG	CCCGCTCCCG
481	6.45e-10	TCACGTATCA	TACATAAGTCTTCCCTCATCTAGTGAG	ACCTCGACAG
754	1.70e-09	GAGTGTGAAT	TCGTCACGAACGTCTCCGTCTCGGGGG	AATGCCTGCA

Motif GASARCBRTMMMMRWMTBGRWRGKACKKYGAR

Start	P-value		Site
79	1.87e-15	GGCTACGTCA	GACAACCATACCCGAATTGATAGTACGTCGAA	AGATACAGCG
797	3.85e-15	TGCAGGACCG	GACAGCTATCCACATCTCGAAGGTACGGTGAA	GCTGCGGTCA
219	3.64e-14	GGGAGGAGTG	GAGAACGGTAACAATCTGGGAGGGACTTCGAG	GGGGAGCACA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010082	100.0	1065	0	0	1	1065	1	1065	0.0	1967
aORI10010275	100.0	28	0	0	264	291	416	443	3.88e-08	53