RefSeq NC_008354
DoriC accession number pORI00000278
OriC length 340 nt
OriC AT content 0.7118
The location of oriC region 3534..90 nt
Browse in NCBI
OriC map
OriC sequences
TTTATCCCTCCTAATTTAGGAATTTGAAACGAGTTGAAAACGAGTTTCTTCTTGTCTTGATAATAAGGGTACTATTTCGATTTTGGATAGTTACCCTTAAAGCATTGGTATATATGGCTTAAAACCCAAAAAAAGTTGCTTTTTCGTACCTATTAATGTATCGTTTTAGGTGTCTAATCAAAAACATACATAGAAAGGGGAAAAAGCAACTTTTTTTATTGTCATAGTTTGTGAAAACTAAGTTGTTTTTATGTGTTATAACATGGAAAAGTATACTGAGAAAAAACAAAGAAATCAAGTATTTCAGAAATTTATTAAACGTCATATTGGAGAGAATCAA
TTTATCCCTCCTAATTTAGGAATTTGAAACGAGTTGAAAACGAGTTTCTTCTTGTCTTGATAATAAGGGTACTATTTCGATTTTGGATAGTTACCCTTAAAGCATTGGTATATATGGCTTAAAACCCAAAAAAAGTTGCTTTTTCGTACCTATTAATGTATCGTTTTAGGTGTCTAATCAAAAACATACATAGAAAGGGGAAAAAGCAACTTTTTTTATTGTCATAGTTTGTGAAAACTAAGTTGTTTTTATGTGTTATAACATGGAAAAGTATACTGAGAAAAAACAAAGAAATCAAGTATTTCAGAAATTTATTAAACGTCATATTGGAGAGAATCAA
AT-rich region
The information of repeat sequences

Motif TCSYWCCT

StartP-valueSite
52.33e-06TTTATCCCTCCTAATTTAGGAA
1442.15e-05AGTTGCTTTTTCGTACCTATTAATGTAT

Motif CGAGTT

StartP-valueSite
411.53e-04GAGTTGAAAACGAGTTTCTTCTTGTC
301.53e-04GAATTTGAAACGAGTTGAAAACGAGT

Motif TGGMTWRWWACCC

StartP-valueSite
1155.23e-08TTGGTATATATGGCTTAAAACCCAAAAAAAGTT
841.02e-07ATTTCGATTTTGGATAGTTACCCTTAAAGCATT
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000278 100.0 340 0 0 1 340 1 340 0.0 628
pORI00000202 88.433 268 22 9 1 262 1 265 0.0 315
pORI00000279 81.557 244 38 7 23 262 241 1 0.0 195
pORI00000233 98.485 66 1 0 1 66 1 66 1.43e-27 117
pORI00000277 100.0 59 0 0 1 59 1 59 2.4e-25 110
pORI00000146 98.387 62 1 0 1 62 1 62 2.4e-25 110
pORI00000275 96.774 62 2 0 1 62 1 62 1.12e-23 104
pORI00000231 96.774 62 2 0 1 62 1 62 1.12e-23 104
pORI00000207 96.774 62 2 0 1 62 1 62 1.12e-23 104
pORI00000204 96.774 62 2 0 1 62 1 62 1.12e-23 104
pORI00000100 96.774 62 2 0 1 62 1 62 1.12e-23 104
pORI00000025 96.774 62 2 0 1 62 1 62 1.12e-23 104
pORI00000005 97.674 43 1 0 23 65 195 153 8.75e-15 75