RefSeq NC_008353
DoriC accession number pORI00000231
OriC length 217 nt
OriC AT content 0.7143
The location of oriC region 2476..90 nt
Browse in NCBI
OriC map
OriC sequences
TTTATCCCTCCTAACTTGGGAATTTGAAACGAGTTGAAAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCAAAGATATAAAAAGTCATTTGAATGTTGATATAACAGTATTTTTGGTTGTTTTTGTTGTTGAAAGAAAATTTGACATGAAAAAACCCCAGTTATATGATTAAGGTGTCGAATCAAAATCAAAAATGGAGGCTTTTTAT
TTTATCCCTCCTAACTTGGGAATTTGAAACGAGTTGAAAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCAAAGATATAAAAAGTCATTTGAATGTTGATATAACAGTATTTTTGGTTGTTTTTGTTGTTGAAAGAAAATTTGACATGAAAAAACCCCAGTTATATGATTAAGGTGTCGAATCAAAATCAAAAATGGAGGCTTTTTAT
AT-rich region
The information of repeat sequences

Motif CCCYMS

StartP-valueSite
62.29e-05TTTATCCCTCCTAACTTGGGA
1644.66e-05CATGAAAAAACCCCAGTTATATGATT

Motif AAACGAG

StartP-valueSite
385.42e-05AACGAGTTGAAAACGAGTTTCTTCTTG
275.42e-05TGGGAATTTGAAACGAGTTGAAAACGA

Motif GGWGKC

StartP-valueSite
2057.33e-05AATCAAAAATGGAGGCTTTTTAT
1822.26e-04ATATGATTAAGGTGTCGAATCAAAAT
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000231 100.0 217 0 0 1 217 1 217 0.0 401
pORI00000005 95.897 195 8 0 23 217 195 1 0.0 316
pORI00000204 86.878 221 22 7 1 217 1 218 0.0 241
pORI00000100 85.586 222 24 8 1 217 1 219 0.0 226
pORI00000207 85.52 221 25 7 1 217 1 218 0.0 224
pORI00000025 85.52 221 25 7 1 217 1 218 0.0 224
pORI00000146 83.857 223 27 9 1 217 1 220 0.0 204
pORI00000275 81.532 222 32 9 1 217 1 218 5.60519e-45 174
pORI00000233 78.475 223 36 10 1 217 1 217 2.45e-33 135
pORI00000278 96.774 62 2 0 1 62 1 62 6.92e-24 104
pORI00000202 96.774 62 2 0 1 62 1 62 6.92e-24 104
pORI00000277 96.61 59 2 0 1 59 1 59 3.22e-22 99
pORI00000279 100.0 45 0 0 23 67 241 197 9.01e-18 84