RefSeq NC_008356
DoriC accession number pORI00000025
OriC length 218 nt
OriC AT content 0.7156
The location of oriC region 2419..90 nt
Browse in NCBI
OriC map
OriC sequences
TTTATCCCTCCTAACTTGGGAATTTGAAACGAGTTGAAAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACGTTCTTTTTTAAAAATATGATTTATCGTTGATGTGACAGTGTTTTTATGTATTTTTGTGGTTGAAAAGAAAATTTGACATGAAAACACCTCAGTTATATTATTAAGGTGTCGAATCTTAAATAAAACTGGGGGATTTTTAT
TTTATCCCTCCTAACTTGGGAATTTGAAACGAGTTGAAAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACGTTCTTTTTTAAAAATATGATTTATCGTTGATGTGACAGTGTTTTTATGTATTTTTGTGGTTGAAAAGAAAATTTGACATGAAAACACCTCAGTTATATTATTAAGGTGTCGAATCTTAAATAAAACTGGGGGATTTTTAT
AT-rich region
The information of repeat sequences

Motif MCCTCM

StartP-valueSite
67.30e-06TTTATCCCTCCTAACTTGGGA
1641.05e-04ACATGAAAACACCTCAGTTATATTAT

Motif AAACGAG

StartP-valueSite
383.45e-05AACGAGTTGAAAACGAGTTTCTTCTTG
273.45e-05TGGGAATTTGAAACGAGTTGAAAACGA

Motif AACTKGGG

StartP-valueSite
2024.26e-06TCTTAAATAAAACTGGGGGATTTTTAT
131.38e-05TATCCCTCCTAACTTGGGAATTTGAAAC
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000025 100.0 218 0 0 1 218 1 218 0.0 403
pORI00000207 99.541 218 1 0 1 218 1 218 0.0 398
pORI00000204 96.33 218 8 0 1 218 1 218 0.0 359
pORI00000100 94.977 219 10 1 1 218 1 219 0.0 342
pORI00000231 85.52 221 25 7 1 218 1 217 0.0 224
pORI00000275 84.615 221 28 6 1 218 1 218 0.0 215
pORI00000005 84.925 199 23 7 23 218 195 1 0.0 195
pORI00000146 85.475 179 17 9 1 175 1 174 0.0 178
pORI00000233 81.921 177 28 4 1 175 1 175 1.14e-36 147
pORI00000278 96.774 62 2 0 1 62 1 62 6.95e-24 104
pORI00000202 96.774 62 2 0 1 62 1 62 6.95e-24 104
pORI00000277 96.61 59 2 0 1 59 1 59 3.23e-22 99
pORI00000279 100.0 45 0 0 23 67 241 197 9.06e-18 84